Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05338 ATGGCGACGCAAACTGTTTATCTCAAAGAACATGAAGGAATTGCACACAATTTTGTGGGGCAGTTATCATCTGCAACTTCAGCACCCTGGTGGAGTGCTGCTTTTGGATCTCAATCTGTTTATGGGGAGTCCTGTGGCCAAATGAAACCCTTTTCATTGGAGCCACCTACCTGTGTAGACCAACTTGCTGCCAGTAAGCAATCCACCAGAGGAGCTGAACAAGTGTTGGGTAAAGGACATCCAACTCAGTTTACCATCTTTCCAGATGATTGTGAAGTGTCAGGTGATGCACAAAAGCCTCACACAACCATATCACTGCAGTCATCACTCACTGATAATACCCGCACTCGTTTTGAGCTTGGATTTAGTCAGCCTATGGTCTGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAACTTATGGACCTCAACTTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGACGATGGACCAATTTATGTGAATGCAAAGCAGTACCATGGAATCATTAGACGTCGCCAGTCCCGTGCCAAAGCTGTACTTGATCACAAATTGATTAAACGTCGCAAGCCTTATATGCATGAGTCACGCCATCTCCATGCACTGCGTCGACCAAGAGGGAGTGGTGGTCGCTTCTTGAACTCAAAGAATTCTGCTAATGGGAATGGCAAAAGTGGCAGTGAAGTTAAAAAAACTGGTGGTGAACAACTGCATTCCAGTGGATCTCAGAGTTCTGAAGTTCTTCAATCTGAGGTTGGAACTTTAAACTCATCAAAAGATACTAATGGTAGCAGTCCAAATATTTGTGGTTCAGAGGTGACTAGCATGTATTCAAGGGGAGCTCTTGCTCTTGATAGCTTTGCTGTCAATCATCTTGGAGCTGCTGTTCACTCTCTGGCAGACATGATAAATAGTGGGCGTGGCATCACCAAATGGGTTACAGCAGCAGATAACTGCTGTAACCTTAAAGTTTGA 993 0.4431 MATQTVYLKEHEGIAHNFVGQLSSATSAPWWSAAFGSQSVYGESCGQMKPFSLEPPTCVDQLAASKQSTRGAEQVLGKGHPTQFTIFPDDCEVSGDAQKPHTTISLQSSLTDNTRTRFELGFSQPMVCAKYPYTDQFYGLFSTYGPQLSGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDHKLIKRRKPYMHESRHLHALRRPRGSGGRFLNSKNSANGNGKSGSEVKKTGGEQLHSSGSQSSEVLQSEVGTLNSSKDTNGSSPNICGSEVTSMYSRGALALDSFAVNHLGAAVHSLADMINSGRGITKWVTAADNCCNLKV. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05338 330 PRINTS CCAAT-binding transcription factor subunit B signature 195 218 IPR001289 GO:0003700|GO:0006355
Seca1g05338 330 PRINTS CCAAT-binding transcription factor subunit B signature 164 186 IPR001289 GO:0003700|GO:0006355
Seca1g05338 330 MobiDBLite consensus disorder prediction 217 273 - -
Seca1g05338 330 Gene3D - 161 223 - -
Seca1g05338 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 63 282 IPR001289 GO:0003700|GO:0006355
Seca1g05338 330 SMART cbf3 160 221 IPR001289 GO:0003700|GO:0006355
Seca1g05338 330 MobiDBLite consensus disorder prediction 198 273 - -
Seca1g05338 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 164 218 IPR001289 GO:0003700|GO:0006355
Seca1g05338 330 ProSiteProfiles NF-YA/HAP2 family profile. 161 221 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05338 Seca-Chr1 157104872 157111939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05338 1 329 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.699 4.99e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca1g05338 CBFB_NFYA 7.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05338 K08064 - gmx:100815382 501.901