Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05337 ATGGCTGCTACACCCTCTGTTTCCACTTCTATCTCCAATAGAATATACAACCTCTCCTTCACCCACTCTTCCCTTTCACTCACTAGCAACTTCCCTCAAAGACCCATATCCCACAAACCCCTCAATCTCAATCTCAAGTCCCAAAGTTTCAGTCTTTCCCCTCTTCCACTTCACCGTCTTCACCCGCCATCCGTTTCCTCCGATGAATTCGAAGTGTCTGAAGGCAGCGACCCAGAATCAGAACCAGAAACCTCTGATGAACCACAACAAGAAGAGGAACAGCAGAAGGTATCAAACGTAAACGATGCTGGGAGGCTCTATGTTGGAAACTTACCATATTCAATGACTTCTTCCCAATTGTCCGAGATCTTTGGAGAAGCTGGCACTTTGGTGTCTGTTGAGGTAGTGTACGATCGAGTCACGGATAGGAGCAGAGGATTTGCATTTGTTACAATGGGGACTATTGAGGAGGCTAAAGAAGCAATTCGAATGTTTGATGGCTCTTTCAATGCTAATGTTAATGACTGTGATGATGTACAGCAAGTTGGTGGTAGGGCTATTAAGGTAAACTTCCCAGAGGTGCCAAGAGGAGGTGAAAGGTTAGTAATGGGGCCAAAAATAAGGAATAACTATAGAGGCTTTGTAGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGTTGGGGACTGACCTCTCAGGATCTTAGAGATGTTTTTGCTGAGCAGCCAGGTTTATTGAGTGCCAAGGTCATCTATGAGAGGGACAGTGGAAGATCTCGAGGTTTTGGCTTTGTCACTTTTGAAACTACTGAGGATGTAGAGGCTGCTTTGAATGTTATGAATGGTGTGGAGGTTCAAGGTCGGCCCTTGAGATTGAATTTAGCTGCAGAGAGGACACCTTCATCTTCTCCAGTTGTTAAGCAAAATAGAGAAAGTAATGTTGATAGCTCAGAATTGCTATCTAGTGCCAGCACATGA 978 0.4489 MAATPSVSTSISNRIYNLSFTHSSLSLTSNFPQRPISHKPLNLNLKSQSFSLSPLPLHRLHPPSVSSDEFEVSEGSDPESEPETSDEPQQEEEQQKVSNVNDAGRLYVGNLPYSMTSSQLSEIFGEAGTLVSVEVVYDRVTDRSRGFAFVTMGTIEEAKEAIRMFDGSFNANVNDCDDVQQVGGRAIKVNFPEVPRGGERLVMGPKIRNNYRGFVDSPHKIYAGNLGWGLTSQDLRDVFAEQPGLLSAKVIYERDSGRSRGFGFVTFETTEDVEAALNVMNGVEVQGRPLRLNLAAERTPSSSPVVKQNRESNVDSSELLSSAST. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05337 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 168 IPR000504 GO:0003723
Seca1g05337 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 291 IPR000504 GO:0003723
Seca1g05337 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 194 IPR000504 GO:0003723
Seca1g05337 325 PANTHER OS02G0815200 PROTEIN 39 300 - -
Seca1g05337 325 SMART rrm1_1 220 293 IPR000504 GO:0003723
Seca1g05337 325 SMART rrm1_1 105 174 IPR000504 GO:0003723
Seca1g05337 325 MobiDBLite consensus disorder prediction 61 101 - -
Seca1g05337 325 Gene3D - 208 318 IPR012677 -
Seca1g05337 325 CDD RRM2_NsCP33_like 220 295 - -
Seca1g05337 325 Gene3D - 63 198 IPR012677 -
Seca1g05337 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 297 IPR000504 GO:0003723
Seca1g05337 325 SUPERFAMILY RNA-binding domain, RBD 101 191 IPR035979 GO:0003676
Seca1g05337 325 MobiDBLite consensus disorder prediction 72 88 - -
Seca1g05337 325 FunFam 33 kDa ribonucleoprotein, chloroplastic 201 305 - -
Seca1g05337 325 MobiDBLite consensus disorder prediction 297 325 - -
Seca1g05337 325 SUPERFAMILY RNA-binding domain, RBD 216 301 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05337 Seca-Chr1 157101478 157104250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05337 91 298 Eukaryotic Initiation Factors Gene Family AT3G16380 29.245 2.83e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05337 - - gmx:100814852 431.409