Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05336 ATGAACGACTTACTCTCCGACAAGAACAACCACCAACACGTCATCCAGATGGCGGAGGCTACCACCGCGGCCACCAGCCTCGAAAAATTCTTCCAGGAAGTGGAGTCCGTTAAGGAGGATCTGAAGGAACTGCAATGGCTCCTCCTCAGCCTCCGCACCTCCAACGAACAGAGTAAGACCGTTCATACCGCAAAGGCAGTTAAGGACCTTCGCTCTCGCATGGACGCTGACGTGTCACTCTCTCTCAGGAAAGCTAAGGTCGTCAAGGCTCGCTTGGACGCCCTTGACCGTTCCAACGAGGCTAGCCGCTCCTTGCCTGATTGCGGACCCGGTTCATCCTCCGATCGAACCCGGTCCTCCGTCGTGAGCGGCTTGAGGAAGAATCTCAAAGACTCCATGGATAGTTTCAATTCCCTGAGGGAGCAGATATCATCAGAGTACAGAGACACCGTGCAACGTAGATATTACACTGTCACCGGCGAGAATCCTGATGACAAAACCATTGACCTCCTCATCTCTACTGGTGAGAGTGAAACTTTCTTACAGAAAGCCATTCAACAGCAAGGGAGAGCCACTATAATGGACACTATCCAAGAGATTCAGGAGAGGCATGGGGCGATGAAGGAGATAGAGAGAAATCTAAATGAGCTGCACCAAGTGTTCTTGGACATGGCAGTGTTGGTCCAAACACAGGGTGAACAGTTAGATGACATAGAGAGTCACATGGCGCGAGCAAATTCTTATGTGAGGGGAGGGGTGCAGCAATTGCAGGTTGCTAGGAAGCATCAAAAGAACACTCGCATGGCAGCTATTCGAATGATAGATATAGCGGTCAACTTCACAGATGGAATGTTTAAGGGAATCTACAACGGCAAGCAATGTCACATCGCAGATATACCAACCGTTTTGAACAGGGCTTGGGCTGCTGGCGTCCACCGAATTATCGTAACTGGTGGGTCCCTTGAGGAATCAAGGGAGGCACTTGCAATTGCAGGAACAGATGGACGGCTTTTCTGTACTGTAGGTGTGCATCCAACACGCTGCAAGGAATTTGAGGAGAGTGGAGATCCAGAAAAGCATTTTCAGGCTCTTTTGTCATTGGCCAAAGAGGGAATTCAGAAAGGAAAGGTGGTTGCCATTGGAGAATGTGGATTGGACTATGACCGGCTTCATTTTTGCCCAGCAGAGATTCAAAAAAAGTATTTCGAGAAGCAGTTTGAATTAGCATATATCACAAAACTGCCTATGTTTTTGCACATGCGAGCAGCAGCTGCAGATTTCTGTGAAATTGTTGAGAAAAATAAGGACAGGTTCACTTCTGGAGTTGCCCATTCATTTACTGGTAGTAAGGATGATTGCACTAAGCTTCTCTCATTTGATAAAATGTACATTGGCATAAATGGATGCTCTCTGAAGACAGCTGAGAACCTTGATGTTGTGAAGGATATTCCTGTTGAGAGAATGATGATTGAGACAGACTCACCATACTGTGAAATAAAAAATACTCATGCAGGAATTGGTTTTGTTAAATCTACATGGCCTTCTAAGAAGAAAGAGAAGTATGATCAAGAGTGCATTGTCAAGGGCCGCAATGAACCTTGTTTAGTTTGGTAA 1614 0.4672 MNDLLSDKNNHQHVIQMAEATTAATSLEKFFQEVESVKEDLKELQWLLLSLRTSNEQSKTVHTAKAVKDLRSRMDADVSLSLRKAKVVKARLDALDRSNEASRSLPDCGPGSSSDRTRSSVVSGLRKNLKDSMDSFNSLREQISSEYRDTVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRATIMDTIQEIQERHGAMKEIERNLNELHQVFLDMAVLVQTQGEQLDDIESHMARANSYVRGGVQQLQVARKHQKNTRMAAIRMIDIAVNFTDGMFKGIYNGKQCHIADIPTVLNRAWAAGVHRIIVTGGSLEESREALAIAGTDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIQKGKVVAIGECGLDYDRLHFCPAEIQKKYFEKQFELAYITKLPMFLHMRAAAADFCEIVEKNKDRFTSGVAHSFTGSKDDCTKLLSFDKMYIGINGCSLKTAENLDVVKDIPVERMMIETDSPYCEIKNTHAGIGFVKSTWPSKKKEKYDQECIVKGRNEPCLVW. 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05336 537 CDD TatD_DNAse 273 536 IPR001130 GO:0016788
Seca1g05336 537 Gene3D - 25 249 - -
Seca1g05336 537 MobiDBLite consensus disorder prediction 98 122 - -
Seca1g05336 537 Pfam Syntaxin 29 232 IPR006011 GO:0016020
Seca1g05336 537 CDD SynN 27 184 IPR006011 GO:0016020
Seca1g05336 537 SMART tSNARE_6 192 259 IPR000727 -
Seca1g05336 537 Pfam TatD related DNase 275 499 IPR001130 GO:0016788
Seca1g05336 537 Pfam SNARE domain 233 269 IPR000727 -
Seca1g05336 537 FunFam Putative tatD related deoxyribonuclease 268 537 - -
Seca1g05336 537 FunFam Syntaxin 132 190 280 - -
Seca1g05336 537 SUPERFAMILY Metallo-dependent hydrolases 273 536 IPR032466 -
Seca1g05336 537 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 197 259 IPR000727 -
Seca1g05336 537 SUPERFAMILY t-snare proteins 26 252 IPR010989 GO:0016020|GO:0016192
Seca1g05336 537 Coils Coil 27 47 - -
Seca1g05336 537 CDD SNARE_syntaxin1-like 196 257 - -
Seca1g05336 537 ProSitePatterns Syntaxin / epimorphin family signature. 203 242 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca1g05336 537 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 24 154 - -
Seca1g05336 537 PANTHER TATD FAMILY DEOXYRIBONUCLEASE 272 536 - -
Seca1g05336 537 MobiDBLite consensus disorder prediction 105 122 - -
Seca1g05336 537 Gene3D - 261 537 - -
Seca1g05336 537 SMART SynN_4 22 148 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05336 Seca-Chr1 157091848 157101082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05336 20 267 SNARE and Associated Proteins AT3G11820 70.161 7.91e-123 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05336 K03424 - gmx:100814321 528.094