Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05333 ATGGATGAGATTGATGTTCCTTCATACTTTCTCTGCCCAATTTCACTGGAAATCATGAAAGACCCAGTTACTGTCTACACAGGGATCACCTATGACAGAGAGAGCATTGAAAAGTGGCTATTTTCTAAGAACAACAACACATGCCCTGTCACAAAACAACCACTCTCAGATTGCACTGATCTAACCCCAAACCACACCCTTCGACGACTCATTCAAGCATGGTGTACCATGAACGCTTCTCACGGCATCGAAAGGATTCCAACTCCAAAGCCACCAATCAACAAATACCAAATTTCAAAGCTTCTCAAAGACGCTTCCCATTCTCCCCTGAATATGCAAATCAAATGTCTCCGAAGGCTTAAATCCATCGCTTCAGGAAGTGAAACAAACAAACGTTGCATGGAAGCAGCTGGTGCTGTTGAATTCTTAGCCTCAATTGTAATGAACAACAACACCGATTCTTCTGAATTAGAAACTAACCCAGAAGACGAAGCCTTAAGCATTCTCCATAACCTCCATCTATCTGAATCAGGGTTGAAGACTCTGTTAAGCTTCAAAAACGGAGACTTTATCAACACCTTAACAAGGGTTATGCAAAAGGGGTTCTTTGAATCACGAGCTTATGCAGTTTTCTTGTTGAAATCTATGTCTCAAGTGGCTGATCCAGTGCATTTATTCCATCTAAGAACAGGACTATTCGTGGAATTAGTGGAAATTCTGAAGGATCAGATTTCCTTAAAGGCATCAAAAGCAACACTACAGACCCTGATTCAACTCTGTCCTTGGGGGAGGAACAGGATCAAAGCAGTGGAAGCAGGTGCTGTTCCTGTTTTGATAGAACTTCTTCTTGATTGTAAAGAAAGAAAGCCTTGTGAAATGATGATGGTGTTGTTGGAGTCTATGTGTCAGTGTGCTGAGGGAAGAGCAGAACTTTTGAGTCATGGAGCAGGGCTTGCTATTGTGTCAAAGAAGATTCTGAGGGTTTCTACTGTGGCAAATGATAGGGCTGTGAGGATTCTGCTTTCTATCTCGAAATTCTCTGCAACACCAAATGTTCTTCAAGAAATGTTGAAACTTGGTGTGGTGGCGAAACTGTGTTTGGTGCTTCAAGTGGATAGTGGAAGTAAGGCTAAGGAGAAAGCAAGAGAGATACTGAAATTGCATGGTAGGACATGGAGGGATTCTCCATGCATACCCAACAATTTGCTTTCTTCCTACCCAGCTTGTATGTGA 1233 0.4225 MDEIDVPSYFLCPISLEIMKDPVTVYTGITYDRESIEKWLFSKNNNTCPVTKQPLSDCTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPINKYQISKLLKDASHSPLNMQIKCLRRLKSIASGSETNKRCMEAAGAVEFLASIVMNNNTDSSELETNPEDEALSILHNLHLSESGLKTLLSFKNGDFINTLTRVMQKGFFESRAYAVFLLKSMSQVADPVHLFHLRTGLFVELVEILKDQISLKASKATLQTLIQLCPWGRNRIKAVEAGAVPVLIELLLDCKERKPCEMMMVLLESMCQCAEGRAELLSHGAGLAIVSKKILRVSTVANDRAVRILLSISKFSATPNVLQEMLKLGVVAKLCLVLQVDSGSKAKEKAREILKLHGRTWRDSPCIPNNLLSSYPACM. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05333 410 PANTHER WDSAM1 PROTEIN 3 399 IPR045185 GO:0061630
Seca1g05333 410 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Seca1g05333 410 SUPERFAMILY RING/U-box 3 82 - -
Seca1g05333 410 Gene3D - 96 391 IPR011989 -
Seca1g05333 410 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Seca1g05333 410 CDD RING-Ubox_PUB 7 57 IPR045210 -
Seca1g05333 410 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Seca1g05333 410 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Seca1g05333 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Seca1g05333 410 SUPERFAMILY ARM repeat 98 384 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05333 Seca-Chr1 157027863 157029095 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05333 1 408 U-box Gene Family AT3G52450 58.864 2.48e-179 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05333 - - gmx:100809123 675.626