Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05332 ATGGATGAAATTGAAGTTCCTCAGTATTTCATCTGCCCTATATCCCTTCAAATCATGAAAGATCCAGTAACTACTATAACAGGCATCACATACGACCGTCATAGCATTGAAAATTGGCTATTCACCAACAACACCACCACCTGCCCTGTCACCAGGCATCTTCTCCATATAGACTCTGACTTAATCCCTAATCACACCCTTCTCCGCCTAATCCAATTTTGGTGCACCCAAAATGCCTCACAAGGCATTGATCGAATTCCCACACCTAAGCCACCCCTTAACAAATTTCAAGTCATCAAACTCCTCAAACAACTCATGGACCCTCACCTTCAGCTCAGAAAGATAAGGGAATTGGAATTGCTAGCGGCAGAGAATGAGAGGAATAGAAAGTGCTTATTACAAGCTGGTGTGCCAAAAGCTATGGTCCTCTTCATATTGACTTGTTTTAGAAAAAATCAAATTGATAAGGGTCTTGAAGAAGCTTTGAGTATATTGCAATTTGTTAATGTTCCAGAAGAGGAAATAAAGATGCTTCTAGAAGAAAATGATCAAGTATTGGATTCTCTAACATGGGTTTTACTTTTAGGCTGTGATGAAGTGGGAAATTCTGTTACTGTGAAATCCCATGCAGTTATAGTGCTGAATACACTCATTCAAAATGCTGGAAACAGAGTTATGGAGAGACTTAAACCTGAATTGTTTGAAAGTATTGTGAAGGTTCTCCGATGTGGGACTACACAACAAGGAATGAAAGCTGCTCTTCATGTGTTGTTAAGCGCTTGTCCTTGGGGAAGGAATCGGATCATGATGGTGGAAAGTGGTGCAGTGTTTGAACTTGTTGAGATTGAAATGGGGACACCTGAAAAGAGAACAACAGAGCTAATCATGGAGATATTGTCTCAATTGTGTTCTTGTGCTAATGGCAGGGCTCAGTTTCTGAGTCACAAAGGTGCCATTGCCGTGTTGACAGCACGAATCTTGAAAGTTTCGCCGGCTGTGGATGACAGAGTAATATTTATTCTTTCATTGGTGTCTATGTTCTGTGGCACATGGGTGGTGCTTCAGGAGATGGTGAAGGTTGGAACTGTATCAAAGCTTTGCATGTTGCTTAAGGCTGATCATGGCACATATCTAAAAGACAGAGCAAGGGAAATACTGAAGTCTCATGCAGACGTTTGGAAACAGTCTCCATGCATTCCTCATGATCGGTCCTTATTTTATGCGAGGTTGAGTAAGTAA 1239 0.4132 MDEIEVPQYFICPISLQIMKDPVTTITGITYDRHSIENWLFTNNTTTCPVTRHLLHIDSDLIPNHTLLRLIQFWCTQNASQGIDRIPTPKPPLNKFQVIKLLKQLMDPHLQLRKIRELELLAAENERNRKCLLQAGVPKAMVLFILTCFRKNQIDKGLEEALSILQFVNVPEEEIKMLLEENDQVLDSLTWVLLLGCDEVGNSVTVKSHAVIVLNTLIQNAGNRVMERLKPELFESIVKVLRCGTTQQGMKAALHVLLSACPWGRNRIMMVESGAVFELVEIEMGTPEKRTTELIMEILSQLCSCANGRAQFLSHKGAIAVLTARILKVSPAVDDRVIFILSLVSMFCGTWVVLQEMVKVGTVSKLCMLLKADHGTYLKDRAREILKSHADVWKQSPCIPHDRSLFYARLSK. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05332 412 Coils Coil 115 135 - -
Seca1g05332 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Seca1g05332 412 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Seca1g05332 412 Gene3D - 96 394 IPR011989 -
Seca1g05332 412 SUPERFAMILY ARM repeat 101 376 IPR016024 -
Seca1g05332 412 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Seca1g05332 412 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
Seca1g05332 412 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Seca1g05332 412 SUPERFAMILY RING/U-box 4 78 - -
Seca1g05332 412 CDD RING-Ubox_PUB 7 52 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05332 Seca-Chr1 157008731 157009969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05332 2 399 U-box Gene Family AT3G11840 42.534 3.62e-117 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05332 - - jre:109013610 525.398