Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05330 ATGGCGACATACTTTCATGGTAACTCCGAAATCCAATCTGCTGGCGGCGCTGATGGACTTCAAACTCTTGTTCTCATGAATCCTGGCTATATCCACTACTCAGACAACGCGCCGCCGCAACAACCACCGTCTCACACCGCCGCCGGTAACTTTGTCTTTCTCAACCCTGCTGCTGCTGCTACCAGTAACAACTCCTTCAGTCCCCACGCGCCACCTGCTCACACCCAACAATTCGTTGGCATCCCTCTCCCTGCTTCCTCTCAAGACCTTAACCACCAACACTCCATGCAAGGCCACCACGACGTCCCTGCCATGCATGGCTTCCTCCCCCGCATGCAGTACAATCTCTGGAACACAATTGACCCCAATTCGGCGGCGCGTGACACTCCACGCGCTCAGCAGGGGTTGTCTTTGAGCCTGTCTTCACAGCAAGCTCGGTTGGGGTCTTTCCGTGAAGGTCAAGCGCCGGCTATGTCTGGTGGTGGTGGGTCACCGTCCTCTGCTTCTGGGGTTACTACTAACAATGGAGGAGCTTCTGGGATTCAGAGTGTGTTTCTGAGCTCAAAGTATTTGAAGGCAGCACATGAGCTTCTAGAAGAAGTGGTGAATGTTAATAATGGGATTAACACTGAATTGACAAAAAAGAGTACTATTGGTGGACAGAACAATAAGGTGATTGGTGAGTCATCAACAGCAGCTAGTGGAGATGGTTCAATTGGTGGCGAAGGAAGTGGGAAACGAAGCTCAGAGTTATCAACAGCTGAAAGACAAGAAATTCAGATGAAGAAAGCAAAGCTCATCAGCATGCTTGATGAGGTGGAGCAAAGGTACAGACAATACCATCATCAGATGGAGATTGTGGTTTCTTCATTTGAACAAGCTGCTGGGATTGGTTCAGCTAGAACTTACACTGCACTTGCACTTCAAACAATCTCTAAACAGTTTCGGTGTTTGAAAGATGCTATAGCTGGTCAAATTAAAGCTGCAAATAAGAGCTTGGGGGAAGATGATTGCTTTGGTGGAGGGAAAATTGAAGGTTCAAGGCTGAAATATGTAGATCATCATCTAAGGCAACAGAGAGCTCTCCAACAATTGGGAATGATCCAGCATAATGCTTGGAGACCCCAGAGAGGTTTGCCTGAAAGATCAGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTTCACCCTTATCCCAAAGATTCAGACAAGCACATGCTTGCAAAACAAACAGGACTTACTAGGAGTCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCCATGGTGGAAGAAATGTACTTGGAGGAGATGAAAGATCAGGAACAAAATGGGTCTGAGAATAAATCAAGCAAGAGCAATGATGATTCTTCTATGAAAATGACAACCCCTCAAGAGAAAGGTCCTACATCTGAAACTGAAGCTAAGAGTTTCACTTCCAAACAAGATGTTTCTAAAGGCCAGGACACTCCAATGGTTTCAGTTTCTAGACCATCAACATCACCACTTGGAGGAAATGTCAGACACCAATCAGGATTCAGCTTCATGGGATCATCAGAACTAGAAGGGATCACACAAGGTAGTCCCAAGAAACCAAGGAACCATGAAATTATGCATTCCCCAAATAATGTCCCTTCTATTAACATGGATGTCAAGCCCAATGAGGTGAACAATGAGCAACTGACAATGAAATTTGGAGATGAGAGGCAGAGCAGAGATGGGTACTCTTTTATGGGAAATCAAACAAATTTCATTGGTGGTTTTGGACAGTACCCAATTGGGGATATTGGTAGGTTTGATGCAGAGCAATTCACACCAAGGTTTTCAGGTAATGGGGTTTCTCTCACTCTTGGTCTTGACTCATTACCAGGAACCCATCAAACATTTCTCCCAAATCAGAACATTCAACTTGGAAGAAGCCTTGACATCAGTGAACCAAATGAGTTTGGTGCCATAAGCACATCCTCTCCTCACTCTACGGCTGCTTATGAGAGTATCAGCATGCAAAATCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGGCCTAA 2070 0.4556 MATYFHGNSEIQSAGGADGLQTLVLMNPGYIHYSDNAPPQQPPSHTAAGNFVFLNPAAAATSNNSFSPHAPPAHTQQFVGIPLPASSQDLNHQHSMQGHHDVPAMHGFLPRMQYNLWNTIDPNSAARDTPRAQQGLSLSLSSQQARLGSFREGQAPAMSGGGGSPSSASGVTTNNGGASGIQSVFLSSKYLKAAHELLEEVVNVNNGINTELTKKSTIGGQNNKVIGESSTAASGDGSIGGEGSGKRSSELSTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQIKAANKSLGEDDCFGGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDQEQNGSENKSSKSNDDSSMKMTTPQEKGPTSETEAKSFTSKQDVSKGQDTPMVSVSRPSTSPLGGNVRHQSGFSFMGSSELEGITQGSPKKPRNHEIMHSPNNVPSINMDVKPNEVNNEQLTMKFGDERQSRDGYSFMGNQTNFIGGFGQYPIGDIGRFDAEQFTPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDISEPNEFGAISTSSPHSTAAYESISMQNPKRFAAQLLPDFVA. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05330 689 ProSiteProfiles 'Homeobox' domain profile. 370 433 IPR001356 GO:0003677
Seca1g05330 689 MobiDBLite consensus disorder prediction 452 518 - -
Seca1g05330 689 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 460 - -
Seca1g05330 689 MobiDBLite consensus disorder prediction 220 255 - -
Seca1g05330 689 Pfam Associated with HOX 186 323 IPR006563 -
Seca1g05330 689 MobiDBLite consensus disorder prediction 443 518 - -
Seca1g05330 689 Coils Coil 256 276 - -
Seca1g05330 689 SUPERFAMILY Homeodomain-like 374 440 IPR009057 -
Seca1g05330 689 MobiDBLite consensus disorder prediction 125 174 - -
Seca1g05330 689 FunFam BEL1-like homeodomain protein 9 376 438 - -
Seca1g05330 689 MobiDBLite consensus disorder prediction 160 174 - -
Seca1g05330 689 SMART HOX_1 373 437 IPR001356 GO:0003677
Seca1g05330 689 MobiDBLite consensus disorder prediction 125 149 - -
Seca1g05330 689 CDD homeodomain 373 434 IPR001356 GO:0003677
Seca1g05330 689 Pfam Homeobox KN domain 390 429 IPR008422 GO:0003677|GO:0006355
Seca1g05330 689 Gene3D - 376 456 - -
Seca1g05330 689 SMART prehox3 179 324 IPR006563 -
Seca1g05330 689 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05330 Seca-Chr1 156990419 156994496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05330 1 689 Homeobox Transcription Factor Family AT2G35940 50.806 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca1g05330 POX 4.4e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05330 - - gmx:100810901 1083.94