Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05326 ATGGATGGCTCTTCTCGAACCTTCTTTTCCACTCTCCTTCTCCTCCTCCTCCTCCTGGTTACAACGGTCCTCGCCACCACTGACCCAAACGACCTGAAAATCCTCAACCAGTTCAGAAAAGGCTTGGACAACCCCGAATTGCTTCCTTGGCCTGAAGAAGGGGGTGACCCATGTGGCATCCCAGGTTGGAAATATATCTTCTGCGACGGTGATAGAGTCTCGCAGATTCAAACTAAGTACTTGAACCTCAGTGGTCCTTTACCTCAGAATCTGAACCAGCTCACCGAGCTCTTCAACTTGGGTCTCCAGAACAACAAGTTCAACGGTCCCTTGCCGTCGCTAAAAGGGTTGTCCAAGCTGAAATACGCGTTTTTGGACAACAATAACTTCGATTCCATCCCTTCTGATTTCTTCGAGGGGCTTGATAGCTTGGAGGTTCTGGCATTGGATAACAATGGTCTCAATGTTACCACTGGTGGGTGGCAATTCCCTTCTCCGTTGCAGGGTTCAACGCAATTGACCAACCTTTCTTGCATTAATTGCAATTTGGCGGGTCCTTTGCCGGATTTTCTCGGGAAGATGAACTCTCTGTCGTTTTTGAAGCTCTCCGGCAACGGTTTGACCGGCGAGATCCCGGTGAGTCTCAACGGGTCAGGGTCTATGCAGGTTCTGTGGTTGAATAACCAGAAGGGTGAGGGTCTCACTGGGAATATTGACGTGGTGGCCACTATGACTTCACTCACGAGTTTGTGGCTTCATGGGAACAAGTTCACTGGGTCTATTCCGGAGAACATTGGGGATTTGGCTACTCTCAAGGTTCTTAACCTCAATGGCAACAATCTCGTTGGTCTAATCCCTGATGCATTAGGTAACATGGAATTGGACAACCTAAATTTGAACAATAACAGGTTCATGGGTCCGATCCCAAATTTTAAAGCATCTAAAGTATCTTATGATAACAATGATTTTTGTCAAAACAAAACCGGGGTACCCTGTGCCTTTGAAGTCATGGCGCTCCTGGGATTTCTTGGTGAGTTGAATTATCCTTCAAATCTAGTTGAATCCTGGACTGGTAATGACCCTTGTAAGGGGCTTTGGTTGGGAATAAAGTGCAATGCCAATGGAAAGGTGTCTATGATTAATTTGCCACACTTTAATCTTAGTGGTACTTTAAGTCCTTCTGTTGCAAACTTAGGTTCTCTTGTTGAAATCAGATTGGGGGGTAACAAGCTCAGTGGTGTAGTACCTAGTAACTGGACTAGCTTGACGTCTTTGACATTGTTGGATCTGAGTGGCAATAACATTTCTCCTCCACTGCCTAAGTTTACTACTGGCTTGAAACCTGTGATTGATGGGAATCCTCTATTCAGTGGTAACCCGGAAGCTCCTTCCTCAGGGAACAACAACCCATCAGCTGGATCTGGGAATGCTGAAAATTCCCCGGGACACTCAAATTCAAGTTCAACTGATTCTTTTGAATCAAAAAAGTCTAAGAGGAAAGGTTTGGTTTTCATTGTAGCTCCCATTGCGGGTGTGGCGGCTGCAGCTTTTCTGCTCATTCCACTTTATGTATATTGTTTCAGGAGGAGAAAGGATGGATACCAGGCTCCTAGTTCACTAGTAATTCACCCCAGAGATCCATCTGATTCAGATAGTACTGTGAAGATTGCTATTGCTAATAATACCAATGGAAGCATTTCCACTGTGACAGGGAGTGGGACTGGGAGTAGAAACAGCAGTGGAATTGGGGAGTCTCATGTCATTGAAGCTGGAAATCTTGTGATATCAGTTCAAGTTTTAAGAAATGTGACTAAGAATTTTGCTCCTGAGAATGAGCTTGGCCGCGGTGGATTCGGGGTTGTTTATAAGGGAGAGTTGGATGATGGGACTAAAATTGCAGTAAAACGAATGGAAGCAGGTGTGATTAGTAGTAAAGCCTTGGACGAATTCCAGGCTGAAATTGCAGTTCTATCAAAAGTCCGACATCGGCATCTTGTGTCTCTTTTGGGTTATTCCATCGAAGGTAATGAGAGGATTCTAGTATATGAGTATATGCCACAAGGGGCTCTCAGTAAGCATCTTTTCCATTGGAAGAGCCTTGAATTGGAGCCTCTCTCTTGGAAGCGGAGGCTTAACATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTCCATACTCTGGCTCACCAGAGCTTCATTCACAGAGATCTTAAGCCATCAAATATTTTGCTTGGTGATGATTTCAGAGCAAAAGTATCAGATTTTGGATTGGTAAAACTTGCTCCTGAAGGCGAAAAATCTGTAGTGACCAGGCTTGCTGGGACTTTTGGATACTTGGCTCCAGAATATGCAGTGACAGGAAAAATCACTACCAAAGCAGATGTTTTCAGTTTTGGGGTTGTGCTAATGGAGCTGTTGACTGGATTGATGGCACTTGATGAGGATAGACCTGAGGAAAGCCAATACTTAGCAGCATGGTTCTGGCATATAAAATCAGATAAGAAAAAACTAATGGCTGCTATTGACCCAGTTCTTGACATAAAGGAAGAAACGTTTGAGAGCATTGCCATCATTGCTGAGCTAGCTGGGCACTGCACTGCCAGAGAACCAAGCCAAAGGCCAGAAATGGGTCATGCTGTGAATGTTCTGGCACCCCTTGTTGAAAAATGGAAACCATTTGATGATGACACGGAGGAGTATTCTGGCATCGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGCTGGCAAGAGGCAGAAGGAAAGGACTTAAGTTATATGGACCTAGAAGACAGTAAGAGTAGTATTCCTGCAAGGCCTACTGGGTTTGCAGATTCTTTTACTTCAGCTGATGGCCGGTGA 2862 0.4493 MDGSSRTFFSTLLLLLLLLVTTVLATTDPNDLKILNQFRKGLDNPELLPWPEEGGDPCGIPGWKYIFCDGDRVSQIQTKYLNLSGPLPQNLNQLTELFNLGLQNNKFNGPLPSLKGLSKLKYAFLDNNNFDSIPSDFFEGLDSLEVLALDNNGLNVTTGGWQFPSPLQGSTQLTNLSCINCNLAGPLPDFLGKMNSLSFLKLSGNGLTGEIPVSLNGSGSMQVLWLNNQKGEGLTGNIDVVATMTSLTSLWLHGNKFTGSIPENIGDLATLKVLNLNGNNLVGLIPDALGNMELDNLNLNNNRFMGPIPNFKASKVSYDNNDFCQNKTGVPCAFEVMALLGFLGELNYPSNLVESWTGNDPCKGLWLGIKCNANGKVSMINLPHFNLSGTLSPSVANLGSLVEIRLGGNKLSGVVPSNWTSLTSLTLLDLSGNNISPPLPKFTTGLKPVIDGNPLFSGNPEAPSSGNNNPSAGSGNAENSPGHSNSSSTDSFESKKSKRKGLVFIVAPIAGVAAAAFLLIPLYVYCFRRRKDGYQAPSSLVIHPRDPSDSDSTVKIAIANNTNGSISTVTGSGTGSRNSSGIGESHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISSKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMPQGALSKHLFHWKSLELEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKPSNILLGDDFRAKVSDFGLVKLAPEGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSDKKKLMAAIDPVLDIKEETFESIAIIAELAGHCTAREPSQRPEMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDLSYMDLEDSKSSIPARPTGFADSFTSADGR. 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05326 953 Gene3D Ribonuclease Inhibitor 334 457 IPR032675 -
Seca1g05326 953 SUPERFAMILY Protein kinase-like (PK-like) 583 883 IPR011009 -
Seca1g05326 953 Gene3D Ribonuclease Inhibitor 29 331 IPR032675 -
Seca1g05326 953 FunFam Leucine-rich repeat receptor-like kinase 334 459 - -
Seca1g05326 953 ProSitePatterns Protein kinases ATP-binding region signature. 613 635 IPR017441 GO:0005524
Seca1g05326 953 MobiDBLite consensus disorder prediction 458 491 - -
Seca1g05326 953 Pfam Leucine rich repeat N-terminal domain 336 372 IPR013210 -
Seca1g05326 953 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Seca1g05326 953 CDD STKc_IRAK 613 886 - -
Seca1g05326 953 Gene3D Phosphorylase Kinase; domain 1 571 684 - -
Seca1g05326 953 Pfam Leucine rich repeat 246 304 IPR001611 GO:0005515
Seca1g05326 953 MobiDBLite consensus disorder prediction 931 953 - -
Seca1g05326 953 SUPERFAMILY L domain-like 57 440 - -
Seca1g05326 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 732 744 IPR008271 GO:0004672|GO:0006468
Seca1g05326 953 FunFam receptor protein kinase TMK1 685 902 - -
Seca1g05326 953 Gene3D Transferase(Phosphotransferase) domain 1 685 903 - -
Seca1g05326 953 PANTHER OSJNBA0070M12.3 PROTEIN 12 953 - -
Seca1g05326 953 FunFam Receptor-like kinase TMK4 29 329 - -
Seca1g05326 953 MobiDBLite consensus disorder prediction 453 493 - -
Seca1g05326 953 FunFam receptor protein kinase TMK1 569 684 - -
Seca1g05326 953 ProSiteProfiles Protein kinase domain profile. 607 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05326 953 SMART LRR_typ_2 398 421 IPR003591 -
Seca1g05326 953 SMART LRR_typ_2 268 291 IPR003591 -
Seca1g05326 953 SMART LRR_typ_2 117 140 IPR003591 -
Seca1g05326 953 SMART LRR_typ_2 244 267 IPR003591 -
Seca1g05326 953 SMART LRR_typ_2 194 218 IPR003591 -
Seca1g05326 953 SMART LRR_typ_2 422 446 IPR003591 -
Seca1g05326 953 SMART serkin_6 607 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05326 953 Pfam Protein kinase domain 610 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05326 Seca-Chr1 156861090 156864724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05326 83 920 Receptor kinase-like Gene Family AT1G55610 30.123 6.66e-85 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Seca1g05326 Pkinase 9.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05326 - - gmx:100305366 1467.6