Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05320 ATGGAGGTAGGTGGCAGCGAGATATCTGACACAGAGACAATGATGTATAGTGAAGACTTGACTGAGAGTACGAGTGATGATCCTGTTAGCAATGGAGAGATAGGTGAAGAAGGTGAAGATGGAGTTCCGTTGACTGAAGGTGGTGATGATGAAGATAGTGAGGAAAGTGAAGATGAAAATGAATCTGGGGATAAATACAGGATTGATGGAGCTGAGGAAATTCGAAAGGTTGACATGATAAGAATAAGTGAAGATGAGTTCAAGTTGTATCACTTTATTAGTCGGTTAGTTGCTTTTGAGTTCTATAATAAGTATGCTCTGAAAAGAGGATTTGCTGCTAGAAAATGGAACACAGTTGTAAACAAGGAAGGTAGAGTGACACAACAAACATTTGTTTGTTTCAGGGAGGGATATCGTTTGAAAAAACACTTGAAGAAGGAGAATCGTAAGAGAGAGGCAAGAGCAATAACTAGGTGTGGTTGTTCTGCATTTCTGAAAGTGCGTTATGCACGAGATGTAAGTCGTTGGATTGTAAAAGCTTTCTCTGATGAGCATAGTCATGAGTTGTTACCTAGGAAATACGAGGGAATGCTAACTTCACACCGGAAGATGAATGAAATAGACATAGTGCAAATGAATACCATGCGTGAAGTTGGTATAGGTGTTACACAAATATATGGGTTAGCGGCAAATCAATCAGGAGGCTATAAAAATGTTGGTTACAGGAAAAGTGATATGTACAATGAAATATTTAAACAAAGACGATCTGAAGGTAGTGATGCCAAAGGTGCTTTATCCTATCTTCGAGCATTGGGTCGCAATGATAAGGATCTGTTTTGGTCTCATACCGTGGATGAAGAAGGGAGGCTGAAACATCTATTTTGGAGTGATGGTAGAAGCCAATGTGATTGCAAATTGTTTGGTGATGTGCTTGCATTTGATGCAACCTATAGACGGAACAAGTATATGTTGCCTTTGGTTGTGTTTGCTGGAGTAAATCATCATAATCAAACCATTGTTTTCGGTAGTGCACTAGTTGCTAACGAAACAGAAGAGACATATGTGTGGTTACTTGAAGAGTTTTTACGTGCAATGAAAGGAAAGGTTCCAATTTCTGTGATTACTGATGGTGATATTGCGATGAGGAATGCCATCAAGCATGTTTTCCCTTCAGCCCGCCATAGGTTGTGTGCGTGGCATTTACTGAGGAACGCTACTAGCAACATTAGCAACCCTAGGTTCACAGCCAAATTAAAAAAGTGTGTGCTAGGTGATTATGAGGTTAGGGGATTTAGAACGAAGTGGGAGGAGTTGATTTCTGAGTTTGGCCTGCAGAGCAACCAATGGTTAATTGATTTGTACGGTAAGAAGAAGATGTGGGCTACTGCCCACATACGTGGTAGCTTCTTTGGTGGCTTCAGGACGACCTCTAGGTGTGAGGGGCTTCACTCTCAAGTAGGTAGATATGTTCATTACAGAAATAATATGAGAGAGTTCTTGAGGCACTTTTTCCAATATTTGGCTTATACTAGGCAGGAGGAGTTGGAGGCTGACTTTGAATCAATTAATGGAGATCCTGTTCTAGAAACACCTTTTGAAGATATTGAAGCATGTGCGGCAAAGTTGTATAGTAGGAAGGTCTTTATGAAGTTTAGAGTTGTGCTTTGGAGGGCATGTAAGCTGAAGGTTAGTGGATGTGAGCGGACCCCAACCTGTCACATATATATTGTGACAAACATAGCAACATGTGCAAGAGAGTGGCATGTGCCATATGTGGCACAAAATGAAGAAGTGAAGTGTTCTTGTCAACGGATGGAGTCAATGGGTATCCCATGTGAGCATATTGTTGTTCTCCTACATTACCTTGATATAAAACAATTGCCAAATTCACTTATTCTAGAAAGGTGGACAAAATATGCAAAGCAATCTGTGGATGGTGCTGATTTGGGTAGCTCTAGTACTGGCGGTTCTATGTGGAAGAGTCAAGTGTTATCGTTGTTGTTTGATTGTTATGAGATGTGCAGACTTGTGGGCAAAAGGATGGACAAATTGGAGGAAACAAGAGGACTTATTAGGAATCATATGCAAAGTTTGAAAGACAATGAAGAAGATGGAAACACTGATGAAGGTAATGATAGGGAAGGGGATGACATTAACCTGAGGGATCCTTCGCAAGTTAGGAGTAAAGGTTGTGGATCGAGGCAGTCTACAGGTGGAAGTAGAGGCAATAGGAGGACCACTACATGCAGTGTATGCCAAGGTCGTGGGCACAACAAACAGACTTGTCGACTTCGTAGAAGGCAAGCACATACAGACACAAATGAAACAGCCGCAAGTGGAGATGAGATAAATGAGTAA 2358 0.4114 MEVGGSEISDTETMMYSEDLTESTSDDPVSNGEIGEEGEDGVPLTEGGDDEDSEESEDENESGDKYRIDGAEEIRKVDMIRISEDEFKLYHFISRLVAFEFYNKYALKRGFAARKWNTVVNKEGRVTQQTFVCFREGYRLKKHLKKENRKREARAITRCGCSAFLKVRYARDVSRWIVKAFSDEHSHELLPRKYEGMLTSHRKMNEIDIVQMNTMREVGIGVTQIYGLAANQSGGYKNVGYRKSDMYNEIFKQRRSEGSDAKGALSYLRALGRNDKDLFWSHTVDEEGRLKHLFWSDGRSQCDCKLFGDVLAFDATYRRNKYMLPLVVFAGVNHHNQTIVFGSALVANETEETYVWLLEEFLRAMKGKVPISVITDGDIAMRNAIKHVFPSARHRLCAWHLLRNATSNISNPRFTAKLKKCVLGDYEVRGFRTKWEELISEFGLQSNQWLIDLYGKKKMWATAHIRGSFFGGFRTTSRCEGLHSQVGRYVHYRNNMREFLRHFFQYLAYTRQEELEADFESINGDPVLETPFEDIEACAAKLYSRKVFMKFRVVLWRACKLKVSGCERTPTCHIYIVTNIATCAREWHVPYVAQNEEVKCSCQRMESMGIPCEHIVVLLHYLDIKQLPNSLILERWTKYAKQSVDGADLGSSSTGGSMWKSQVLSLLFDCYEMCRLVGKRMDKLEETRGLIRNHMQSLKDNEEDGNTDEGNDREGDDINLRDPSQVRSKGCGSRQSTGGSRGNRRTTTCSVCQGRGHNKQTCRLRRRQAHTDTNETAASGDEINE. 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05320 785 SMART 26again6 598 625 IPR006564 GO:0008270
Seca1g05320 785 MobiDBLite consensus disorder prediction 39 59 - -
Seca1g05320 785 Coils Coil 681 701 - -
Seca1g05320 785 MobiDBLite consensus disorder prediction 726 757 - -
Seca1g05320 785 Pfam SWIM zinc finger 595 622 IPR007527 GO:0008270
Seca1g05320 785 Pfam MULE transposase domain 310 404 IPR018289 -
Seca1g05320 785 MobiDBLite consensus disorder prediction 695 785 - -
Seca1g05320 785 ProSiteProfiles Zinc finger SWIM-type profile. 591 623 IPR007527 GO:0008270
Seca1g05320 785 MobiDBLite consensus disorder prediction 10 30 - -
Seca1g05320 785 MobiDBLite consensus disorder prediction 695 723 - -
Seca1g05320 785 Pfam FAR1 DNA-binding domain 100 191 IPR004330 -
Seca1g05320 785 PANTHER OS01G0519700 PROTEIN 98 707 - -
Seca1g05320 785 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05320 Seca-Chr1 156823870 156827399 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g05320 MULE 1.9e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05320 - - tpra:123913749 702.975