Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05312 ATGTCGGTGAAGGAGTGTGACCACCACAAGGGAAAGAAGCACAAACTCTTCAAGCGAATCTTCTGGGGGATTGTGATCTTCGTGTTCATCGTTCTGGTGACGATTCTAATAATTTGGGCAATCCTTAAGCCTTCAAAACCAACCTTCATCCTCCAAGACGTCACCGTTTACGCTTTCAACGCCACAATCCCTAACTTCCTCACTTCCAACTTCCAAGTCACGCTTTCCTCTCGCAATCCCAACGACAAAATCGGCATCTACTACGACCGTCTCGACACCTACATGACCTACCGGAGCCAGCAAGTCACCTTCCGCACCGCCATCCCTCCGTCGTATCAAGGCCACAAAGAGTTTGACGTGTGGTCCCCTTTCGTCTACGGCACCGACGTCCCCGTCGCTCCTTACAACTCCGTTAGCCTCAGCCAGGATCAGTCTAACGGTAACGTCCTCGTTATCGTTAAGATTGACGGCAGAGTCCGATGGAAGGTTGGTGCCTTTATCTCTGGCCATTACCATCTCTATGTACGGTGCCCTGCTTTCATCACCTTCGGTCCACGTAGCACCGGAATTGCCGTCGGTGAAAACGCCATTAAGTATCAGTTAGTCCAGCGATGCACCGTTAGCCAGCCCCCATTGAACGGTGCCTTCTACGGGCCCGCCATTCCGCCGGCAGCGCAACCCCATCACCGCGGCAGGAACTGCTGCTGCTGCCTCTTTGGCGTCTTCTGGAAGCTTCTCATTGCGCTCATCGTCCTCTTTGGCCTCGCAATCCTGATCTTCTATCTCATCGTTCAACCTCGCTTATTCAAGTTCTATGTCAATAAAGCAGAGCTAACCCAATTTGACTACACCGACAACACACTCCATTACAACATGGTGCTCAACTTCACCGCACGCAACCCCAACAAAAAGCTTAGCATCTACTACGACAAAGTGGAGGCCTTGGCATTCTATGAGGGGTCAAGGTTCGCCAATGCTGACGTCATCACCCATATGAACTCTTTCCGTCAGTACAAGAAGAGCAGCGACCCCATGAGTGGCGTTTTCAAAGGACAGCAATTGTTGCTTCTTGACAATGATCAGGTTTCTGAATTCAACATAGACAAGAGTGTTGGGGTTTATGACATCTATGTGAAGCTCTACTTCAGAATTAGGTTCAGGCTCGGGGACTCAATTTCCCACACATACAAGCCCAAAGTCAAATGTCACCTCAAGGTTCCCTTCAACTCTAACAATACATTCACATTTTATGCGACCACCAAGTGCGATGTTGATTAA 1278 0.4969 MSVKECDHHKGKKHKLFKRIFWGIVIFVFIVLVTILIIWAILKPSKPTFILQDVTVYAFNATIPNFLTSNFQVTLSSRNPNDKIGIYYDRLDTYMTYRSQQVTFRTAIPPSYQGHKEFDVWSPFVYGTDVPVAPYNSVSLSQDQSNGNVLVIVKIDGRVRWKVGAFISGHYHLYVRCPAFITFGPRSTGIAVGENAIKYQLVQRCTVSQPPLNGAFYGPAIPPAAQPHHRGRNCCCCLFGVFWKLLIALIVLFGLAILIFYLIVQPRLFKFYVNKAELTQFDYTDNTLHYNMVLNFTARNPNKKLSIYYDKVEALAFYEGSRFANADVITHMNSFRQYKKSSDPMSGVFKGQQLLLLDNDQVSEFNIDKSVGVYDIYVKLYFRIRFRLGDSISHTYKPKVKCHLKVPFNSNNTFTFYATTKCDVD. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05312 425 PANTHER OS05G0367900 PROTEIN 18 200 IPR044839 GO:0098542
Seca1g05312 425 Pfam Late embryogenesis abundant protein 74 177 IPR004864 -
Seca1g05312 425 Pfam Late embryogenesis abundant protein 296 402 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05312 Seca-Chr1 156757262 156762946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05312 263 413 SNARE and Associated Proteins AT1G32270 34.839 1.70e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05312 - - gmx:100807701 365.54