Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05311 ATGTATGAGAAACAACCCCAGTTAAACGGAGCCTACTACGGCCCCGCCATCCCGCCACCTAAAACCTCCCACCGCCCAGGGCGTGGCAGCGGTTGCGGTTGCTGCTGCGGCTGCCTGTTCAGCCTCATCTTCAAACTCATCCTCACCGTCGTCATCATCGTGGGCATCGCTGTGTTCCTCTTCTGGCTCATCGTCCGCCCCAACGTCGTCAAGGTTCACGTAACCGATGCTTCCCTCACCCAATTCAACTACGCCAACAACACCCTCCAATACAACCTTGCTCTCAACTTCACCGTTCGAAACCCCAACAAGAGGCTCGGCATCTACTACGACTACATCGAAGCCAGGGCATTGTACCAGGACGCCAGGTTCGACTCCGAATTCATAGACCCTTTCTATCAGGGCCACAAGAACACCACGTTTTTGAGCACTGAGTTCAAGGGTCAACACGTCATGACGCTTGACGCTGACCAGTCTTCCGAATTGAGCAAGGAGAAGGGCTCAGGGGTTTACGGGATCGATGTGAAGCTTTATCTGAGGGTGAGGTTCAAGTTGGGATCGCTCAAGACCAAGACGTTGAAGCCAAAGGTTAGCTGTGAGTTGCACGTTCCTTTGACTTCGGCCGGTGGAGCCACGAGTGGCTTTCAGACCACCAAGTGCGACTGGGATCGCTGA 675 0.5452 MYEKQPQLNGAYYGPAIPPPKTSHRPGRGSGCGCCCGCLFSLIFKLILTVVIIVGIAVFLFWLIVRPNVVKVHVTDASLTQFNYANNTLQYNLALNFTVRNPNKRLGIYYDYIEARALYQDARFDSEFIDPFYQGHKNTTFLSTEFKGQHVMTLDADQSSELSKEKGSGVYGIDVKLYLRVRFKLGSLKTKTLKPKVSCELHVPLTSAGGATSGFQTTKCDWDR. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05311 224 PANTHER OS05G0367900 PROTEIN 32 205 IPR044839 GO:0098542
Seca1g05311 224 Pfam Late embryogenesis abundant protein 97 199 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05311 Seca-Chr1 156744514 156745188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05311 64 214 SNARE and Associated Proteins AT1G32270 38.816 1.11e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05311 - - gmx:100793187 335.109