Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05301 ATGTCTAGCTCCAGAAAGAAGCTTCTTTTAAACACAGTGTCTGTGAAACTTGGCTGTGGCAGCTGCAGAAGACCAAAGCTATGTCGCATATTCCACCCAAAGCCAAAACCCAAGAACCCCACTTACCAAAAACACAAACTTTACAACCATTCCTCTTCTGGCACTTGGGGTGAGGACAAATATGACAGCACCAGCACCACCACAAACACCACCCCCACCAACACTGCAACCACATTCTCTCCTTGCTATGTTGATTCCTCACACTTTTCTGATTCAGAGACCTACATGAAGGCCCCAAAGACAGTAGGGGGTTTCGGCAGAGCTGGCAGAGAAGGAGTGGCAGTAGAGAAAGATTCTGATGACCCTTATCTTGATTTCAGGCATTCCATGCTTCAAATGATATTGGAGAATGAGATATACTCTAAGGACGATCTCAGGGAGCTTCTGAATTGCTTTCTTCAGCTGAATTCACCTTATCATCATGGGGTTATAGTCAGAGCTTTCACTGAGATCTGGAATGGGGTCTTCTCTGTGAGGTCCAATTCACCAAAGCTTCAAATCCCCCGCAAGCCTCGTGAGTTCTAA 585 0.4598 MSSSRKKLLLNTVSVKLGCGSCRRPKLCRIFHPKPKPKNPTYQKHKLYNHSSSGTWGEDKYDSTSTTTNTTPTNTATTFSPCYVDSSHFSDSETYMKAPKTVGGFGRAGREGVAVEKDSDDPYLDFRHSMLQMILENEIYSKDDLRELLNCFLQLNSPYHHGVIVRAFTEIWNGVFSVRSNSPKLQIPRKPREF. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05301 194 NCBIfam uncharacterized plant-specific domain TIGR01568 113 173 IPR006458 -
Seca1g05301 194 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 53 177 IPR038933 GO:0045892
Seca1g05301 194 ProSiteProfiles OVATE domain profile. 115 174 IPR006458 -
Seca1g05301 194 Pfam Transcriptional repressor, ovate 119 175 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05301 Seca-Chr1 156642591 156643175 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca1g05301 Ovate 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05301 - - gmx:106797222 285.804