Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05300 ATGAAGCTCCCTTCTCTTCTCAGGATCACAGAAACCAAATCTTCCTCTTCATCCCCATGGCCCTGGCCATCTTGTCACCAACCAAAAACACACTCTTTCAGAGCCACCACCAACAATAAAACCATAAACTCAGATACCACCACCATGGACATGCTTGAAAGCTCTGAATCACTCTTCACTGTTTCTCCCCACTCTGTTAGCTTCTCAACTGCTTCAGAACAACAATCCAACAAAAGAGCCGATTCAATCGAAACCGTCATTCGCGGGTTGCGTTCTGACCGTTTGTTCTTCGAGCCAGATGAAACCAGTTCCATATTAGAAGCTAAAGCTGGAAGCTTGCCATTCAAAGACAGCGTTGTGTTATCTTTGGAATCTCAAGACCCTTACCTTGATTTTCGAAAATCCATGGAGGAGATGGTAACAGTTCATGGTGTGAAAGATTGGGAGAGTCTTCAAGAGCTTATGTGTTGGTATTTAAGGGTCAATGAAAAATCCAATCATGGATATATTGTTGGTGCTTTTGTTGATTTATTGGTTGGTCTTGCATTTGCTGGTTCTGCTTCTGCTTCATCAACAACAACAACTACTTCTTCTTCTTCTACTTCCCATTCCCCTTCTTCTCCTTTATCGTTTTATAGTTCTTCTCTGTCTTCTTCTTATTGCAGCACTCGTTGTGTTTCTTGTTTGGAAGCTGAGGTTCATGATGATGATGATGTTAGTACTCCTAGTTCATCTTTGTTGTTAGAACAAGTTAGGGAGGAGATTAATCATGAAGAAGATGTGGCTTCATCTTCATCTTCATCAAATATTTGA 813 0.4108 MKLPSLLRITETKSSSSSPWPWPSCHQPKTHSFRATTNNKTINSDTTTMDMLESSESLFTVSPHSVSFSTASEQQSNKRADSIETVIRGLRSDRLFFEPDETSSILEAKAGSLPFKDSVVLSLESQDPYLDFRKSMEEMVTVHGVKDWESLQELMCWYLRVNEKSNHGYIVGAFVDLLVGLAFAGSASASSTTTTTSSSSTSHSPSSPLSFYSSSLSSSYCSTRCVSCLEAEVHDDDDVSTPSSSLLLEQVREEINHEEDVASSSSSSNI. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05300 270 Pfam Transcriptional repressor, ovate 125 181 IPR006458 -
Seca1g05300 270 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 41 181 IPR038933 GO:0045892
Seca1g05300 270 ProSiteProfiles OVATE domain profile. 121 180 IPR006458 -
Seca1g05300 270 MobiDBLite consensus disorder prediction 1 45 - -
Seca1g05300 270 NCBIfam uncharacterized plant-specific domain TIGR01568 120 182 IPR006458 -
Seca1g05300 270 MobiDBLite consensus disorder prediction 8 45 - -
Seca1g05300 270 MobiDBLite consensus disorder prediction 235 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05300 Seca-Chr1 156627297 156628109 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca1g05300 Ovate 2.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05300 - - lang:109348301 248.825