Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05290 ATGTCGATAAACCACTACTCACCAGAGGCACCCGAAACGACAACGTTCTGGTGGACTACTCAACAGCAAAACCCACCCATCCCCAACCCCAACCCCCAATTCTGCCTCAATTCTCACACTCCATCTTCTTCAACGCACCTCAACAACAACAACCAAGACGAAGAAGAAGAAGGCGAAGACGACGTCGTCGAAGAGGACCAACGTTCCAACAACACACAAGAAGAAGAGAAGGAAGCCATGTTCGAGAAGCCATTGACTCCCAGCGACGTTGGAAAGCTCAACCGCCTCGTCATTCCCAAACAGCACGCCGAAAAGTACTTCCCACTCGGCGGCTCTGACTCAGGCTTGCTCCTCAGTTTCGAGGACGAGTCAGGTAAGTGTTGGCGCTTCCGTTACTCCTATTGGAATAGTAGCCAGAGTTACGTTTTGACCAAAGGTTGGAGCCGTTACGTCAAAGACAAACGCCTCGATGCCGGCGACGTCGTTTTGTTCCACAGACACCGTACTCACTCTAACCGCTTCTTCATCACCTGGAGGCGCCGCCACCCTACACCACCTGCGCACGTTAACACTGACGGCAACGGGAATGTGAATGGCACTGTTCCAGCTCTAGCGTGGACCAGAGGCTTCTATTCTACGCCTCCTTATCCTACGCATCATCACCCCTTGCCATACCAACCTGACACCTCTCTTCATGCAGCAGGTGGAGGGTCCCAAGGTCAGAAGGGGGGAAACAGTTGTAATTCATCAGGTTCCAGGGTGCTGAGGCTGTTTGGTGTGAACATGGAATGCCAACCTTCTCAAACCTTCACACCTGAATGCTCAACCCAACAATTCTACCATCAACCTTCTTATTCTTCTTCCAACCCTCACCATCACATGCTACATCAACAGCCAGATTAG 903 0.5161 MSINHYSPEAPETTTFWWTTQQQNPPIPNPNPQFCLNSHTPSSSTHLNNNNQDEEEEGEDDVVEEDQRSNNTQEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGSDSGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFHRHRTHSNRFFITWRRRHPTPPAHVNTDGNGNVNGTVPALAWTRGFYSTPPYPTHHHPLPYQPDTSLHAAGGGSQGQKGGNSCNSSGSRVLRLFGVNMECQPSQTFTPECSTQQFYHQPSYSSSNPHHHMLHQQPD. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05290 300 MobiDBLite consensus disorder prediction 33 49 - -
Seca1g05290 300 CDD B3_DNA 80 180 IPR003340 GO:0003677
Seca1g05290 300 MobiDBLite consensus disorder prediction 280 300 - -
Seca1g05290 300 MobiDBLite consensus disorder prediction 65 83 - -
Seca1g05290 300 ProSiteProfiles B3 DNA-binding domain profile. 81 182 IPR003340 GO:0003677
Seca1g05290 300 MobiDBLite consensus disorder prediction 1 24 - -
Seca1g05290 300 Gene3D - 68 187 IPR015300 -
Seca1g05290 300 SMART B3_2 81 182 IPR003340 GO:0003677
Seca1g05290 300 Pfam B3 DNA binding domain 81 181 IPR003340 GO:0003677
Seca1g05290 300 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 276 IPR044800 GO:0003700
Seca1g05290 300 MobiDBLite consensus disorder prediction 1 87 - -
Seca1g05290 300 MobiDBLite consensus disorder prediction 217 249 - -
Seca1g05290 300 SUPERFAMILY DNA-binding pseudobarrel domain 78 183 IPR015300 -
Seca1g05290 300 MobiDBLite consensus disorder prediction 232 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05290 Seca-Chr1 156389911 156391600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05290 74 265 RAV Transcription Factor Family AT5G06250 51.691 1.03e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g05290 B3 4.9e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05290 K09287 - gmx:100802734 295.434