Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05284 ATGGCGGCCATCAGAAGAATAATTGGATCCAATCAAAATAAAATCTTCTCTCCATTTCTTCTCACTTTTCGCAGGGCAATTTCTTACAAGCTTTTCGTTGGAGGACTATCCTACTACACCACAGAGAAAGCATTGTCAGATGCATTTTCCAATTACGGACAAGTTATTGAAGCCAAAATTATAACAGATAGGGTATCAGAGAGATCTAAAGGGTTTGGGTTTGTCACTTTTGCTTCACAAGATGAGGCTGAGAATGCCATAGCTGAGATGAATGGAAAGGCACTGAATGGTCGTGTTGTGTTTGTTGATTATGCAAAACCTGATACCAAATCTGGTTTTGGAATGCCAATTGCCAGAGGACCTCCTGAAGACCTGAACCAACAGGACACAGTTGATTCCCCACCTCAGGCCATGTGA 417 0.4197 MAAIRRIIGSNQNKIFSPFLLTFRRAISYKLFVGGLSYYTTEKALSDAFSNYGQVIEAKIITDRVSERSKGFGFVTFASQDEAENAIAEMNGKALNGRVVFVDYAKPDTKSGFGMPIARGPPEDLNQQDTVDSPPQAM. 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05284 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Seca1g05284 138 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 27 114 - -
Seca1g05284 138 MobiDBLite consensus disorder prediction 115 138 - -
Seca1g05284 138 SUPERFAMILY RNA-binding domain, RBD 28 120 IPR035979 GO:0003676
Seca1g05284 138 SMART rrm1_1 30 103 IPR000504 GO:0003723
Seca1g05284 138 Gene3D - 24 130 IPR012677 -
Seca1g05284 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05284 Seca-Chr1 156332890 156334377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05284 31 106 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 3.35e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05284 - - lja:Lj1g3v4721740.1 216.468