Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g05284 | ATGGCGGCCATCAGAAGAATAATTGGATCCAATCAAAATAAAATCTTCTCTCCATTTCTTCTCACTTTTCGCAGGGCAATTTCTTACAAGCTTTTCGTTGGAGGACTATCCTACTACACCACAGAGAAAGCATTGTCAGATGCATTTTCCAATTACGGACAAGTTATTGAAGCCAAAATTATAACAGATAGGGTATCAGAGAGATCTAAAGGGTTTGGGTTTGTCACTTTTGCTTCACAAGATGAGGCTGAGAATGCCATAGCTGAGATGAATGGAAAGGCACTGAATGGTCGTGTTGTGTTTGTTGATTATGCAAAACCTGATACCAAATCTGGTTTTGGAATGCCAATTGCCAGAGGACCTCCTGAAGACCTGAACCAACAGGACACAGTTGATTCCCCACCTCAGGCCATGTGA | 417 | 0.4197 | MAAIRRIIGSNQNKIFSPFLLTFRRAISYKLFVGGLSYYTTEKALSDAFSNYGQVIEAKIITDRVSERSKGFGFVTFASQDEAENAIAEMNGKALNGRVVFVDYAKPDTKSGFGMPIARGPPEDLNQQDTVDSPPQAM. | 139 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g05284 | 138 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 107 | IPR000504 | GO:0003723 | |
Seca1g05284 | 138 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 27 | 114 | - | - | |
Seca1g05284 | 138 | MobiDBLite | consensus disorder prediction | 115 | 138 | - | - | |
Seca1g05284 | 138 | SUPERFAMILY | RNA-binding domain, RBD | 28 | 120 | IPR035979 | GO:0003676 | |
Seca1g05284 | 138 | SMART | rrm1_1 | 30 | 103 | IPR000504 | GO:0003723 | |
Seca1g05284 | 138 | Gene3D | - | 24 | 130 | IPR012677 | - | |
Seca1g05284 | 138 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 31 | 100 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g05284 | Seca-Chr1 | 156332890 | 156334377 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g05284 | 31 | 106 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 35.526 | 3.35e-09 | 52.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g05284 | - | - | lja:Lj1g3v4721740.1 | 216.468 |