Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05274 ATGGAAAATTTTATACCACCAGGTTATCGGTTCTATCCTACAGAAGAAGAGCTTATTAAGTTCTATCTTCACAATAAACTCGAAGGAGAGAGGGAGGACATCAATCGCGTCATACCAATCCTTAATATTTATGACTTCCACCCATCCCAACTCCCACAAAATTCAGGAGAGGTGAGTGTGACAGAGACGGAGCAATGGTTCTTTTTCGTTCCGAGGCAAGAAAGTGAAGCGAGAGGAGGGAGACCAAAGCGTCTCACAAATACAGGGTACTGGAAGGCTACTGGCTCTCCGAATCATGTGTATTCCTCTGATAATCGCATCATCGGCTTGAAAAGGACCATGGTTTTCTATGACGGAAGAGCCCCTAACGGAACTAAAACCGATTGGAAGATGAATGAGTATAAGGCTATCAAAAACGGATCAGCATCCTCTTCCAATAAGGCACCTGCAGCTCCCATGTTAAGGGAGGAATTCAGTTTATGCCGAGTGTACAAGAAATCAAAGTGCTTGCGGGCATTTGATAGACGACCACCGCCAAGAAGCAGGGAGAGGGATCAGCACAAGAAAAAGGGGGAGAGTAGTCAAACTGCAATAATAAGCTCACCAGAAAGTTCGTTATCCTCTGGAGAGCATGGTCAAATGGACGTTGATGAGGAACCTTTCTTGTTGGACTGGGAGGAAGTGAATCGCTTCTTGGGATCGGAACCATGA 711 0.4543 MENFIPPGYRFYPTEEELIKFYLHNKLEGEREDINRVIPILNIYDFHPSQLPQNSGEVSVTETEQWFFFVPRQESEARGGRPKRLTNTGYWKATGSPNHVYSSDNRIIGLKRTMVFYDGRAPNGTKTDWKMNEYKAIKNGSASSSNKAPAAPMLREEFSLCRVYKKSKCLRAFDRRPPPRSRERDQHKKKGESSQTAIISSPESSLSSGEHGQMDVDEEPFLLDWEEVNRFLGSEP. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05274 236 MobiDBLite consensus disorder prediction 172 192 - -
Seca1g05274 236 ProSiteProfiles NAC domain profile. 5 166 IPR003441 GO:0003677|GO:0006355
Seca1g05274 236 MobiDBLite consensus disorder prediction 193 211 - -
Seca1g05274 236 Pfam No apical meristem (NAM) protein 6 135 IPR003441 GO:0003677|GO:0006355
Seca1g05274 236 SUPERFAMILY NAC domain 4 166 IPR036093 GO:0003677|GO:0006355
Seca1g05274 236 MobiDBLite consensus disorder prediction 172 221 - -
Seca1g05274 236 Gene3D NAC domain 14 170 IPR036093 GO:0003677|GO:0006355
Seca1g05274 236 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05274 Seca-Chr1 156238119 156239859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05274 1 229 NAC Transcription Factor Family AT5G22380 48.319 2.91e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g05274 NAM 6.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05274 - - gmx:100800056 322.783