Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05266 ATGCTAGGGAAAAAGATGGTATCTATCAAGAAACTGGCTAAGAAGGTGAAGGTTGTTGGTGGAGTTGACCCTGACCCTAACCCTGCTCATTATGAGTGTTTGCTCAAGGTCAAGGAATTTGAAGAAGAGTACCCTATCAAAACCAAAAAAACACCACCAACTGGGTGTTTTGCACTTTATGTTGGGGAAGAACGCCAGAGGTATGTGATTCCAACCCGTTACCTTTCTCACCCCTTATTCAAGATGCTGTTGGAGAAAGCATACAATGAATTTGGATTTGAGCAGAGGAATGCCCTGGTAGTTCCATGCACTGTTTCCACATTCCAGGAAGTGGTGAAAGCTATAAAATGCAACAATGGCAAGTTTGACCTGGAAATTTTTTTTGCAGAGTTAGTTTAA 399 0.4185 MLGKKMVSIKKLAKKVKVVGGVDPDPNPAHYECLLKVKEFEEEYPIKTKKTPPTGCFALYVGEERQRYVIPTRYLSHPLFKMLLEKAYNEFGFEQRNALVVPCTVSTFQEVVKAIKCNNGKFDLEIFFAELV. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05266 132 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 45 111 IPR003676 GO:0009733
Seca1g05266 132 Pfam Auxin responsive protein 47 114 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05266 Seca-Chr1 156151988 156152386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05266 27 118 Calmodulin-binding Proteins AT5G20810 46.875 1.51e-21 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05266 K14488 - gmx:100776885 177.948