Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05262 ATGGATACATCAAATCCTGCTGTCTTTGTCAATGCTGAGCTATTACACTTCTATGTTGGAAGAAGGGTTCGGGCAGTGATGCAGGTTATGCGATCGGACGGTGTAACTGTTATTGGAAAATCCACGGATGAGAAGCAGCTAGTAGTAAAAGGATCTCCCCCACCTGCTCCTCTTTCAACTTTTGTAGAAGTTATTGGTATTGTTGACCGCGATAAGTCTATCCGTGCTGAGACATGGACCAATTTTGGTGATGCAATTGGTATATGGTCAGCTACCAAAAGCTTTGTCAGCTTGCAAATGGAGAATTTAAACACTTGTTCCTGTGAGTTTATAACAAGCTTATCTGATGATGCGAAGACGTCTCTATCATATGAAAAAGCTATAGCCTAG 390 0.4179 MDTSNPAVFVNAELLHFYVGRRVRAVMQVMRSDGVTVIGKSTDEKQLVVKGSPPPAPLSTFVEVIGIVDRDKSIRAETWTNFGDAIGIWSATKSFVSLQMENLNTCSCEFITSLSDDAKTSLSYEKAIA. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05262 129 SUPERFAMILY Nucleic acid-binding proteins 6 84 IPR012340 -
Seca1g05262 129 Gene3D - 2 105 IPR012340 -
Seca1g05262 129 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 100 - -
Seca1g05262 129 Pfam Replication factor A protein 3 1 86 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05262 Seca-Chr1 156114671 156115442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05262 1 88 Core DNA Replication Machinery Family AT4G18590 63.636 1.33e-36 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05262 K10740 - gmx:100306641 140.198