Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g05261 | ATGCCTGGGACAAGACAGAATCCAGAGTCACCAGAGGGGAAACCCACAGATTCTGATGAGCAGGTAGACTTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAAGAGGAAGAAGAGGAAGAGGAAGAGGAGGTGGAAGAGGAAGAGGAAGAGGTAGAGGAAGAGACTAAGCCCTCAGACGGTGAGGATGAGATGCGAGTAGCAGATACTAAGGATGAGGTTGAGAAAAAGAAACACGCTGATCTTCTTGCGCTTCCACCTCATGGATCAGAGGTCTATATTGGGGGCATTCCTCAAAATGTTTCTGAAGAAGATTTGAGATCCTTCTGTCAATCTGTGGGAGAAGTGTCAGAGGTAAGGGTTATGAAGGGGAAAGAATCAGGTGAAGGATTAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATTGAGGAGCTGAACAATTCTGAATTTAAGGGAAAAAGAATAAAGTGCTCAACGTCTCAAGCTAACAATAGGTTGTTCATTGGTAATGTTCCTAAAAGTTGGACTGTAGAAGATATGAAGAAGGTTGTTGCAGAGGTTGGCCCTGGAGTCATTTCTGTGGAGCTCTTGAAGGATCCACAGAGTTCTGGCCGTAATAGGGGATTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACTCTAAATTTAAACTTGACAATAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGATTCATCTGCAGCATCCCAGGTAAAAGCAGTGTATGTAAAGAATCTTCGAGAAAACATTACTCAGGATTGCCTTAAGAAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGTTCTCCCTCCTGCTAAAGCTGGACAAGAAAAAAGCAGATTTGGTTTTGTGCACTTTTCTGATAGGTCAAGTGCCATGAAGGCGTTGAAGAATACAGAGAAGTATGAAATTGAAGGCCAAACTTTGGAGTGTTCACTTGCTAAGCCACAGGCAGATCAGAAGTCGTCTGGTGCATCAAATTCACAAAAATCAGTTGTACTTCCCACTTATCCACCTCGTCTTGGTTATGGTATGGTTGGAGGTGCATATGGTGCTATTGGTGCAGGATATGGTGCTGCTGGCTTTGCACAACCACTCATGTATGGTGCGGGAGCAACCCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCAGATGGAAGGATCGGATATGTGTTGCAACAGCCGGGTTTGCAACAGCCTGCTCCTTCACCAGTATCCCGTAATGGAAGAGGTGGTGGTGGTGGTAGCTCAAGTGGTGGCAAACGCAGTTATGATAATAACCGTAACCGTGGACATGGCCGATACCATCCCTACTAA | 1443 | 0.4456 | MPGTRQNPESPEGKPTDSDEQVDFDGDNDQEETMEEEVEYEEVEEEEEVEEEEEEEEEEVEEEEEEVEEETKPSDGEDEMRVADTKDEVEKKKHADLLALPPHGSEVYIGGIPQNVSEEDLRSFCQSVGEVSEVRVMKGKESGEGLGYAFVTFKTKELASKAIEELNNSEFKGKRIKCSTSQANNRLFIGNVPKSWTVEDMKKVVAEVGPGVISVELLKDPQSSGRNRGFAFIEYYNHACAEYSRQKMSNSKFKLDNNAPTVSWADPRNSDSSAASQVKAVYVKNLRENITQDCLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIEGQTLECSLAKPQADQKSSGASNSQKSVVLPTYPPRLGYGMVGGAYGAIGAGYGAAGFAQPLMYGAGATPAGMAMMPMLLPDGRIGYVLQQPGLQQPAPSPVSRNGRGGGGGSSSGGKRSYDNNRNRGHGRYHPY. | 481 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g05261 | 480 | CDD | RRM_SF | 107 | 179 | - | - | |
Seca1g05261 | 480 | Coils | Coil | 33 | 73 | - | - | |
Seca1g05261 | 480 | Gene3D | - | 17 | 184 | IPR012677 | - | |
Seca1g05261 | 480 | FunFam | RNA recognition motif-containing protein | 16 | 185 | - | - | |
Seca1g05261 | 480 | MobiDBLite | consensus disorder prediction | 438 | 466 | - | - | |
Seca1g05261 | 480 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 268 | 377 | - | - | |
Seca1g05261 | 480 | SMART | rrm2_1 | 106 | 179 | IPR003954 | GO:0003676 | |
Seca1g05261 | 480 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 279 | 357 | IPR000504 | GO:0003723 | |
Seca1g05261 | 480 | SMART | rrm1_1 | 186 | 263 | IPR000504 | GO:0003723 | |
Seca1g05261 | 480 | SMART | rrm1_1 | 106 | 179 | IPR000504 | GO:0003723 | |
Seca1g05261 | 480 | SMART | rrm1_1 | 280 | 353 | IPR000504 | GO:0003723 | |
Seca1g05261 | 480 | SUPERFAMILY | RNA-binding domain, RBD | 275 | 365 | IPR035979 | GO:0003676 | |
Seca1g05261 | 480 | SUPERFAMILY | RNA-binding domain, RBD | 102 | 269 | IPR035979 | GO:0003676 | |
Seca1g05261 | 480 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 105 | 183 | IPR000504 | GO:0003723 | |
Seca1g05261 | 480 | MobiDBLite | consensus disorder prediction | 22 | 73 | - | - | |
Seca1g05261 | 480 | Gene3D | - | 268 | 399 | IPR012677 | - | |
Seca1g05261 | 480 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 185 | 267 | IPR000504 | GO:0003723 | |
Seca1g05261 | 480 | MobiDBLite | consensus disorder prediction | 1 | 88 | - | - | |
Seca1g05261 | 480 | MobiDBLite | consensus disorder prediction | 74 | 88 | - | - | |
Seca1g05261 | 480 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 18 | 473 | - | - | |
Seca1g05261 | 480 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 107 | 177 | IPR000504 | GO:0003723 | |
Seca1g05261 | 480 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 187 | 254 | IPR000504 | GO:0003723 | |
Seca1g05261 | 480 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 281 | 350 | IPR000504 | GO:0003723 | |
Seca1g05261 | 480 | Gene3D | - | 185 | 266 | IPR012677 | - | |
Seca1g05261 | 480 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 186 | 266 | - | - | |
Seca1g05261 | 480 | MobiDBLite | consensus disorder prediction | 437 | 480 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g05261 | Seca-Chr1 | 156105679 | 156110774 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g05261 | 107 | 424 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 25.753 | 1.26e-15 | 77.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g05261 | K13161 | - | gmx:100798476 | 649.047 |