Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05261 ATGCCTGGGACAAGACAGAATCCAGAGTCACCAGAGGGGAAACCCACAGATTCTGATGAGCAGGTAGACTTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAAGAGGAAGAAGAGGAAGAGGAAGAGGAGGTGGAAGAGGAAGAGGAAGAGGTAGAGGAAGAGACTAAGCCCTCAGACGGTGAGGATGAGATGCGAGTAGCAGATACTAAGGATGAGGTTGAGAAAAAGAAACACGCTGATCTTCTTGCGCTTCCACCTCATGGATCAGAGGTCTATATTGGGGGCATTCCTCAAAATGTTTCTGAAGAAGATTTGAGATCCTTCTGTCAATCTGTGGGAGAAGTGTCAGAGGTAAGGGTTATGAAGGGGAAAGAATCAGGTGAAGGATTAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATTGAGGAGCTGAACAATTCTGAATTTAAGGGAAAAAGAATAAAGTGCTCAACGTCTCAAGCTAACAATAGGTTGTTCATTGGTAATGTTCCTAAAAGTTGGACTGTAGAAGATATGAAGAAGGTTGTTGCAGAGGTTGGCCCTGGAGTCATTTCTGTGGAGCTCTTGAAGGATCCACAGAGTTCTGGCCGTAATAGGGGATTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACTCTAAATTTAAACTTGACAATAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGATTCATCTGCAGCATCCCAGGTAAAAGCAGTGTATGTAAAGAATCTTCGAGAAAACATTACTCAGGATTGCCTTAAGAAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGTTCTCCCTCCTGCTAAAGCTGGACAAGAAAAAAGCAGATTTGGTTTTGTGCACTTTTCTGATAGGTCAAGTGCCATGAAGGCGTTGAAGAATACAGAGAAGTATGAAATTGAAGGCCAAACTTTGGAGTGTTCACTTGCTAAGCCACAGGCAGATCAGAAGTCGTCTGGTGCATCAAATTCACAAAAATCAGTTGTACTTCCCACTTATCCACCTCGTCTTGGTTATGGTATGGTTGGAGGTGCATATGGTGCTATTGGTGCAGGATATGGTGCTGCTGGCTTTGCACAACCACTCATGTATGGTGCGGGAGCAACCCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCAGATGGAAGGATCGGATATGTGTTGCAACAGCCGGGTTTGCAACAGCCTGCTCCTTCACCAGTATCCCGTAATGGAAGAGGTGGTGGTGGTGGTAGCTCAAGTGGTGGCAAACGCAGTTATGATAATAACCGTAACCGTGGACATGGCCGATACCATCCCTACTAA 1443 0.4456 MPGTRQNPESPEGKPTDSDEQVDFDGDNDQEETMEEEVEYEEVEEEEEVEEEEEEEEEEVEEEEEEVEEETKPSDGEDEMRVADTKDEVEKKKHADLLALPPHGSEVYIGGIPQNVSEEDLRSFCQSVGEVSEVRVMKGKESGEGLGYAFVTFKTKELASKAIEELNNSEFKGKRIKCSTSQANNRLFIGNVPKSWTVEDMKKVVAEVGPGVISVELLKDPQSSGRNRGFAFIEYYNHACAEYSRQKMSNSKFKLDNNAPTVSWADPRNSDSSAASQVKAVYVKNLRENITQDCLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIEGQTLECSLAKPQADQKSSGASNSQKSVVLPTYPPRLGYGMVGGAYGAIGAGYGAAGFAQPLMYGAGATPAGMAMMPMLLPDGRIGYVLQQPGLQQPAPSPVSRNGRGGGGGSSSGGKRSYDNNRNRGHGRYHPY. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05261 480 CDD RRM_SF 107 179 - -
Seca1g05261 480 Coils Coil 33 73 - -
Seca1g05261 480 Gene3D - 17 184 IPR012677 -
Seca1g05261 480 FunFam RNA recognition motif-containing protein 16 185 - -
Seca1g05261 480 MobiDBLite consensus disorder prediction 438 466 - -
Seca1g05261 480 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 268 377 - -
Seca1g05261 480 SMART rrm2_1 106 179 IPR003954 GO:0003676
Seca1g05261 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 357 IPR000504 GO:0003723
Seca1g05261 480 SMART rrm1_1 186 263 IPR000504 GO:0003723
Seca1g05261 480 SMART rrm1_1 106 179 IPR000504 GO:0003723
Seca1g05261 480 SMART rrm1_1 280 353 IPR000504 GO:0003723
Seca1g05261 480 SUPERFAMILY RNA-binding domain, RBD 275 365 IPR035979 GO:0003676
Seca1g05261 480 SUPERFAMILY RNA-binding domain, RBD 102 269 IPR035979 GO:0003676
Seca1g05261 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Seca1g05261 480 MobiDBLite consensus disorder prediction 22 73 - -
Seca1g05261 480 Gene3D - 268 399 IPR012677 -
Seca1g05261 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 267 IPR000504 GO:0003723
Seca1g05261 480 MobiDBLite consensus disorder prediction 1 88 - -
Seca1g05261 480 MobiDBLite consensus disorder prediction 74 88 - -
Seca1g05261 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 18 473 - -
Seca1g05261 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 177 IPR000504 GO:0003723
Seca1g05261 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 254 IPR000504 GO:0003723
Seca1g05261 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 350 IPR000504 GO:0003723
Seca1g05261 480 Gene3D - 185 266 IPR012677 -
Seca1g05261 480 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 186 266 - -
Seca1g05261 480 MobiDBLite consensus disorder prediction 437 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05261 Seca-Chr1 156105679 156110774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05261 107 424 Eukaryotic Initiation Factors Gene Family AT4G34110 25.753 1.26e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05261 K13161 - gmx:100798476 649.047