Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05246 ATGACGGTTTTGGAAGAAACGCACACTCGAACTGTTCGATCTTGTGCTTGGTCACCATCTGGGAAACTGTTGGCCACTGCAAGCTTTGATGCTACCACTGCCATATGGGAAAACGATGGGGATGATTTTCAGTGTGTCTCTACTTTGGAGGGTCATGAAAATGAAGTGAAGAGTGTAACTTGGAATGCATCTGGAAATTTGCTTGCAACTTGTAGTAGAGATAAATCTGTTTGGATTTGGGAAGTGCAGCCGGGCAATGAGTTTGAGTGTGTGTCTGTGCTGCAAGGGCATACACAGGATGTGAAAATGGTGAAGTGGCACCCGACAGAGGATATCTTATTTTCATGTAGCTATGATAATACTGTTAAGGTTTGGGCAGATGAAGGTGACAGTGATGACTGGCAGTGTGTTCAAACTCTTGGAGAACCTAATAATGGTCATACTTCTACTGTTTGGGCCCTGTCCTTCAATGCTAGTGGAGACAAAATGGTTACCTGTAGTGATGATCTTACCCTGAAGGTATGGGAAACAGAAAACACAGGGGGACAATCTGGTGGTGGATTTGCACCTTGGAGACATCTTTGCACTCTTACAGGGTATCATGATCGGACAATTTTCTCAGTTAATTGGTCAAGGGAAGGTATCATTGCCAGTGGCGCTGCTGATGACACTATACAGCTTTTTGTGGATAACAATGAAAGTCAGGTTGGTGGTCCTTTGTACAAGTTGCTTCTGAAAAAGGAGAAGGCTCATGACATGGACATAAATTCTGTGCAGTGGAGCCCTGGGGAGAAGCCGCTACTAGCCTCTGCAAGCGATGATGGGACAATCAAGGTGTGGGAGCTGGTATCACCATCACAGTGGTGA 867 0.4533 MTVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENDGDDFQCVSTLEGHENEVKSVTWNASGNLLATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVKWHPTEDILFSCSYDNTVKVWADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNASGDKMVTCSDDLTLKVWETENTGGQSGGGFAPWRHLCTLTGYHDRTIFSVNWSREGIIASGAADDTIQLFVDNNESQVGGPLYKLLLKKEKAHDMDINSVQWSPGEKPLLASASDDGTIKVWELVSPSQW. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05246 288 CDD WD40 6 281 - -
Seca1g05246 288 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 5 37 - -
Seca1g05246 288 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 1 284 IPR028608 GO:0016226|GO:0097361
Seca1g05246 288 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 288 IPR001680 GO:0005515
Seca1g05246 288 ProSiteProfiles Trp-Asp (WD) repeats profile. 49 90 IPR001680 GO:0005515
Seca1g05246 288 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 49 83 - -
Seca1g05246 288 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Seca1g05246 288 Gene3D - 1 288 IPR015943 GO:0005515
Seca1g05246 288 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 125 IPR001680 GO:0005515
Seca1g05246 288 ProSiteProfiles Trp-Asp (WD) repeats profile. 5 37 IPR001680 GO:0005515
Seca1g05246 288 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 179 IPR001680 GO:0005515
Seca1g05246 288 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Seca1g05246 288 ProSitePatterns Trp-Asp (WD) repeats signature. 68 82 IPR019775 -
Seca1g05246 288 Pfam WD domain, G-beta repeat 89 125 IPR001680 GO:0005515
Seca1g05246 288 Pfam WD domain, G-beta repeat 44 80 IPR001680 GO:0005515
Seca1g05246 288 Pfam WD domain, G-beta repeat 134 175 IPR001680 GO:0005515
Seca1g05246 288 Pfam WD domain, G-beta repeat 7 36 IPR001680 GO:0005515
Seca1g05246 288 Pfam WD domain, G-beta repeat 249 280 IPR001680 GO:0005515
Seca1g05246 288 SUPERFAMILY WD40 repeat-like 7 280 IPR036322 GO:0005515
Seca1g05246 288 ProSitePatterns Trp-Asp (WD) repeats signature. 268 282 IPR019775 -
Seca1g05246 288 SMART WD40_4 190 229 IPR001680 GO:0005515
Seca1g05246 288 SMART WD40_4 87 126 IPR001680 GO:0005515
Seca1g05246 288 SMART WD40_4 42 81 IPR001680 GO:0005515
Seca1g05246 288 SMART WD40_4 1 37 IPR001680 GO:0005515
Seca1g05246 288 SMART WD40_4 133 176 IPR001680 GO:0005515
Seca1g05246 288 SMART WD40_4 241 281 IPR001680 GO:0005515
Seca1g05246 288 PRINTS G protein beta WD-40 repeat signature 68 82 IPR020472 -
Seca1g05246 288 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Seca1g05246 288 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Seca1g05246 288 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 1 286 - -
Seca1g05246 288 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 288 - -
Seca1g05246 288 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 125 - -
Seca1g05246 288 PANTHER WD40 PROTEIN CIAO1 2 284 IPR028608 GO:0016226|GO:0097361
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05246 Seca-Chr1 155874490 155879392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05246 20 284 U-box Gene Family AT2G33340 27.068 2.50e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05246 K24730 - gmx:100778826 551.206