Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05242 ATGGTTGTGCAAGAGAGTGAGATGAACTCGCAAGGGGAGGTTGAATCTGTTCTGCAGAGAGAACAAGAAGCTAACAAGAACAACAATTATCATCCATTTTCATCATCACTTGGAAGACAATCATCCATATACTCTCTCACCCTTGATGAGTTCCAACATAGCCTATGTGAGAGTGGCAAGAATTTTGGGTCCATGAACATGGATGAGTTCCTTAGCAGCATATGGAATGCAGAAGAGAATCAACAACATCATGCCATCAACTCTTCCAATTCCAACCACCAAAACATGATCAACATCATCAACAACAACAATTCTATTACCCAAACTTCCACTCAGAAAGGGATAACAAAGCAACCAAGCCTCCCTCGTCAACCTTCACTATCCATTCCTGCACCTCTCTGCAGGAAAACAGTGGATGAAGTTTGGTCTGAGATACACAGAGAACAACAACAGAACAACAACAACAACATTGTTCAGAATACCGAGTCTGCCCCTCGTCAACCAACTTTTGGGGAGATGACTCTGGAGGATTTCTTGGTTAAAGCAGGGGTAGTTAGGGAACAACCATGTAACACAATGCAGCATGCTCCTCCTACAGTTGCAGCCTCTCATCACCACCAACAACAGCAGCATTATGCAATGTATCCAAATAACAGCTCTACAATTGCTCCTTTTATTGGTGGTGGTGGAGCAGGGAATGTGGTTGCACCGCCTTACCAAGGGGTGGCTCAGGGAAGTGGTGGGGTAGTTGGGGAGCCTTCTGGGTATGTTGGAAATGGGAAGAGGGATGGTACTGGTGGGTATCCTCTTCCACCACCAGGGGCTTGCTTTGGAGGGAGAGTGGTGAATGGAGGTGGTGGTTTTGGAGTGGCACCTAGTATGGGAATGGGTGCACCTGTTAGTCCAGCTTCATCTGATGGGATAGGGGCTGAAAATTCTGGTGGTCAATTTGGGCTTGACATGAGTGGTTTAAGAGGAAGAAAGAGGATGGTTGATGGTCCTGTGGAAAAGGTGGTGGAGAGAAGGCAGAGGAGAATGATCAAGAATAGAGAGTCAGCAGCCAGGTCTAGAGCCAGAAAACAGGCATACACAGTTGAATTAGAAGCAGAACTGAACCAATTAAAAGAAGAGAATGCTCAACTGAAACAGGCGCTGGCTGAGCTCGAGAGGAGGAGAAGGCAACAGTTTTTAGAGGAAGTGAACGTGAGAGTTCAAACCAAAGCTCAGAAGTTAAAAGAAAAATTGAGAGGCTTGAGAAGGAACCTGAGTTGTCCTTTGTGA 1281 0.459 MVVQESEMNSQGEVESVLQREQEANKNNNYHPFSSSLGRQSSIYSLTLDEFQHSLCESGKNFGSMNMDEFLSSIWNAEENQQHHAINSSNSNHQNMINIINNNNSITQTSTQKGITKQPSLPRQPSLSIPAPLCRKTVDEVWSEIHREQQQNNNNNIVQNTESAPRQPTFGEMTLEDFLVKAGVVREQPCNTMQHAPPTVAASHHHQQQQHYAMYPNNSSTIAPFIGGGGAGNVVAPPYQGVAQGSGGVVGEPSGYVGNGKRDGTGGYPLPPPGACFGGRVVNGGGGFGVAPSMGMGAPVSPASSDGIGAENSGGQFGLDMSGLRGRKRMVDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAQLKQALAELERRRRQQFLEEVNVRVQTKAQKLKEKLRGLRRNLSCPL. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05242 426 CDD bZIP_plant_BZIP46 341 395 - -
Seca1g05242 426 SUPERFAMILY Leucine zipper domain 341 390 IPR046347 GO:0003700|GO:0006355
Seca1g05242 426 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 344 359 IPR004827 GO:0003700|GO:0006355
Seca1g05242 426 Pfam bZIP transcription factor 341 391 IPR004827 GO:0003700|GO:0006355
Seca1g05242 426 Coils Coil 357 421 - -
Seca1g05242 426 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 38 409 IPR043452 GO:0003700|GO:0045893
Seca1g05242 426 SMART brlzneu 337 402 IPR004827 GO:0003700|GO:0006355
Seca1g05242 426 Gene3D - 339 391 - -
Seca1g05242 426 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 339 391 IPR004827 GO:0003700|GO:0006355
Seca1g05242 426 FunFam protein ABSCISIC ACID-INSENSITIVE 5 isoform X1 339 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05242 Seca-Chr1 155851925 155854243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05242 1 395 bZIP Transcription Factor Family AT2G36270 52.620 1.16e-117 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca1g05242 bZIP_1 2.9e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05242 K14432 - gmx:100790948 499.59