Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05235 ATGGCGGAAGAACATCGATGCCAAGCACCGGAAGGCCACAGACTCTGCGCCAACAACTGCGGCTTCTTCGGTAGTCCAGCCACCATGAATCTCTGCTCCAAATGTTACAGAGACATCCGTTTGAAGGAGCAGGAACAAGCCAAAACCAAATCCACCATCGAAACCGCTCTCTCCTCTTCCACCGCTGCCGCCGCCGCGGCCGCTGCTGTGGTTGCCGCTCCGGCCGTCGAATTCCTCCCTCAGCCGCCGGCGGTTATCTCGCCGACAATCGCGCCTGACGCGTCGAGCCCTGCGCCCGTAGCGGTCGTCGAGTCGGCTCAGCCGAACCGGTGCGGATCTTGCCGAAAACGCGTCGGTCTGACCGGGTTCAAGTGCAAGTGCGGAACCACGTTTTGCGGGGCCCACAGGTATCCAGAGAAACACGGTTGCGGCTTCGATTTCAAGGCGGTGGGGCGAGAGGAGATAGCGCGAGCGAATCCAGTGATCAAAGCTGATAAGCTGAGAAGGATTTAA 513 0.5965 MAEEHRCQAPEGHRLCANNCGFFGSPATMNLCSKCYRDIRLKEQEQAKTKSTIETALSSSTAAAAAAAAVVAAPAVEFLPQPPAVISPTIAPDASSPAPVAVVESAQPNRCGSCRKRVGLTGFKCKCGTTFCGAHRYPEKHGCGFDFKAVGREEIARANPVIKADKLRRI. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05235 170 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 170 - -
Seca1g05235 170 FunFam Zinc finger AN1-type containing 6 91 166 - -
Seca1g05235 170 Pfam AN1-like Zinc finger 111 147 IPR000058 GO:0008270
Seca1g05235 170 SMART AN1_Zf_4 111 148 IPR000058 GO:0008270
Seca1g05235 170 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Seca1g05235 170 SUPERFAMILY AN1-like Zinc finger 103 165 IPR035896 -
Seca1g05235 170 Gene3D - 88 166 IPR035896 -
Seca1g05235 170 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Seca1g05235 170 Gene3D - 1 63 - -
Seca1g05235 170 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Seca1g05235 170 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Seca1g05235 170 ProSiteProfiles Zinc finger AN1-type profile. 105 151 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05235 Seca-Chr1 155675168 155675680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05235 1 170 C2H2 Transcription Factor Family AT3G52800 52.778 5.15e-56 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05235 - - gmx:100789686 264.233