Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05227 ATGATGATGGACTCCCACTCGCACAAGCAACTCTTCCCTCTCCTCTTTCTTTTCCTCATTCTACATCTCTCAGCTCAAAATTCACTTGATGGGTCTTATTTGCAAGCAGAGGCTCTTCTTCAACATCAGCAGCTAAATGATAGCCCAACAAAATTGTTCGTTTTTGGAGACTCATATGCTGACACAGGTAACATAAGGAAAGGTTTGGCTAATTCATGGAAAGACCCTTATGGCATCACCTTTCCCGGCAAGCCCGCCGGTCGATTTTCCGACGGCAGGGTCCTCACCGACTACATCGCTAAGTATTTGAAAGTGAAATCGCCAGTACCATACAGAATGAGGAAACTGATGCCACAACATCTGAAATATGGGATGAACTTTGCATTCGGTGGAACTGGTGTGTTTGACACTTCGGTTCCAGCCCCAAACATGACAACCCAGATCGATTTGTTGCAGCAGGTCATCAAATACAATGTGTACACTGCCTCAGATCTCTCCAACTCAGTGGCACTCGTCTCTGTCGCTGGAAATGACTATAGTCATTACTTGGCCACAAATGGCTCTGCTGAGGGTTTACCATCTTTTGTAGCCGCAGTGATTAATCAGACAAGCACGAATCTGATTCGCATCAGAGGGTTGGGAGTGAAGAAAATTGTTGTGAGCAATCTTCAACCCGTTGGATGCCTTCCACGTATGACAGCCTCATCCTCATTCCAACATTGTAACGCCACATCCAACAACCTCGTACTTCTCCACAACGCACTCTTGAACGAAGCCGTGACCAAATTGAACCAATTAGAAACCAATAAAAACTCTTCTTCGGCGCCCTTCCTAGTTCTTAACATTTACGACAGCTTTATGTCGGTGTTGAACCACCCATCGACACATAACATTCAGAACGAGTTGATGCCATGTTGCGTTGGTGTGAGCAGTGAGTATTCATGTGGGAGTGTGGATGAGAAAAATAAGAATGTGAAGAAATATAGGGTGTGTGATGAGCCCAAATCGGCTTTCTTTTGGGATATGGTGCACCCTACGGAGGCAGGATGGCATGCGGTGTATAACAAGTTGAGAACCATGAATGCTCTTCAACAGATTCATTACTAA 1107 0.4517 MMMDSHSHKQLFPLLFLFLILHLSAQNSLDGSYLQAEALLQHQQLNDSPTKLFVFGDSYADTGNIRKGLANSWKDPYGITFPGKPAGRFSDGRVLTDYIAKYLKVKSPVPYRMRKLMPQHLKYGMNFAFGGTGVFDTSVPAPNMTTQIDLLQQVIKYNVYTASDLSNSVALVSVAGNDYSHYLATNGSAEGLPSFVAAVINQTSTNLIRIRGLGVKKIVVSNLQPVGCLPRMTASSSFQHCNATSNNLVLLHNALLNEAVTKLNQLETNKNSSSAPFLVLNIYDSFMSVLNHPSTHNIQNELMPCCVGVSSEYSCGSVDEKNKNVKKYRVCDEPKSAFFWDMVHPTEAGWHAVYNKLRTMNALQQIHY. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05227 368 CDD SGNH_plant_lipase_like 52 357 IPR035669 -
Seca1g05227 368 Pfam GDSL-like Lipase/Acylhydrolase 52 356 IPR001087 GO:0016788
Seca1g05227 368 Gene3D SGNH hydrolase 40 367 IPR036514 -
Seca1g05227 368 SUPERFAMILY SGNH hydrolase 49 357 - -
Seca1g05227 368 PANTHER OSJNBB0059K02.9 PROTEIN 20 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05227 Seca-Chr1 155600012 155604504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05227 46 353 Pollen Coat Proteome AT1G75930 26.970 3.00e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05227 - - gmx:100788092 541.576