Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05226 ATGGTCGTGTTTCTGATCACTACTTTTTCATCCCTCTCACCTTCACCCTGGTTTCCCAAGATTAACATCTTCTGTAGCTGTGAAACATGCCAAGCTTATCTCACTTCAAGCTGGTCCAAAGACTTCGTTAATCTTTGTGATTGGTATTCTCATCTTCTCCGAAACTCACCTTCCAAAACCATCCACATCCACGTGCTTAAAAACACCATCACCGCCAACCCAGACAACGTTGAGTACATGCTCAAGACAAGATTCAATAATTACCCAAAAGGGAAAAACTTTTCCACCATCTTGGGTGATTTTCTAGGCCAAGGTATTTTCAACGTGGATGGTGAATTGTGGAGCTTTCAGAAAAAGATTGCAACTTTGGAGCTTAACAACAACAACTCCATAAGATCTTTCACCTTCGATATTGTCCAATTCGAAATCCAACATCGACTTGTCCCTCTTCTATTGTCAAAGCAACACCATGATGATGTGTTGGATTTGCAAGATGTTTTTAGAAGGTTCTCTTTTGATACTATTTGTAAATTCTCTTTCGGGTTGGACCCTATGTGTCTAGAGCTATCTCTGCCTATATCAGATTTTGCACTTTCCTTTGACTTGGCATCAAAATTGTCAGCAGAAAGAGCCATGACAGTGTCCCCTTTTATTTGGAAAATGAAGAAGTTGTTCAATTTAGGTAGTGAGAAGAAGCTTCGAGAAGCTCTTAGAATGATCAATATCTTAGCCAAAGAGGTCATAAGGCAGAGAAGAAAAATGGGGTTTTCTAATAACAAAGACTTGTTGTCACGGTTCATGAGTACTATCAATGATGACACGTTTTTAAGAGACATTGTCATAAGTTTCCTATTAGCTGGTCGTGACACTGTGACTTCAGCACTCACAAGCCTCTTCTGGTTGTTATCAAAACACCCTGAAGTAGGGACAGAGATTCTTCTAGAAGCAGAGGAGCTTGAGGCCACAATAACCTTTCAACAGTTGCAACAATTGCAGTATTTACATGCAGCAGCATATGAGAGTATGAGATTGTATCCCCCAATTCAATTTGATTCAAAGTTCTGTTTGGAAGATGATGTGTTACCTGATGGGACATCAGTGAAGAGTGGGACTAGGGTAACTTACCATCCATATGCAATGGGTAGGTTAGAGGAAATATGGGGTCCAGATTGTTTAGAATTCAAGCCACAAAGGTGGTTGAAGAATGGGGTGTTTTGCCCTCAAAGTCCATTTAAGTACCCAGTTTTTCAAGGAGGAATGAGGGTGTGTTTGGGGAAAGAAATGGCTCTGTTGGAGGTGAAAAGTGTGGCAATTTCATTGCTTAGGAGGTTCCACATCGAAATGGTAGCACCTCAACATCACATCACTAACACACCACGTTTCTCTCCTGGTCTCACTTCTACTTTTAGTTGCGGCCTTCCTGTGAAGGTACGTGAACGAGGAATGAACCAAGGCCAAGCACCCTCATAA 1470 0.4129 MVVFLITTFSSLSPSPWFPKINIFCSCETCQAYLTSSWSKDFVNLCDWYSHLLRNSPSKTIHIHVLKNTITANPDNVEYMLKTRFNNYPKGKNFSTILGDFLGQGIFNVDGELWSFQKKIATLELNNNNSIRSFTFDIVQFEIQHRLVPLLLSKQHHDDVLDLQDVFRRFSFDTICKFSFGLDPMCLELSLPISDFALSFDLASKLSAERAMTVSPFIWKMKKLFNLGSEKKLREALRMINILAKEVIRQRRKMGFSNNKDLLSRFMSTINDDTFLRDIVISFLLAGRDTVTSALTSLFWLLSKHPEVGTEILLEAEELEATITFQQLQQLQYLHAAAYESMRLYPPIQFDSKFCLEDDVLPDGTSVKSGTRVTYHPYAMGRLEEIWGPDCLEFKPQRWLKNGVFCPQSPFKYPVFQGGMRVCLGKEMALLEVKSVAISLLRRFHIEMVAPQHHITNTPRFSPGLTSTFSCGLPVKVRERGMNQGQAPS. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05226 489 PRINTS P450 superfamily signature 286 303 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05226 489 PRINTS P450 superfamily signature 423 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05226 489 PRINTS P450 superfamily signature 414 423 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05226 489 PRINTS P450 superfamily signature 336 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05226 489 Gene3D Cytochrome P450 41 487 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05226 489 Pfam Cytochrome P450 69 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05226 489 SUPERFAMILY Cytochrome P450 57 480 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05226 489 CDD CYP86A 60 476 - -
Seca1g05226 489 PANTHER CYTOCHROME P450 29 454 - -
Seca1g05226 489 PRINTS E-class P450 group I signature 295 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05226 489 PRINTS E-class P450 group I signature 413 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05226 489 PRINTS E-class P450 group I signature 423 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05226 489 PRINTS E-class P450 group I signature 275 292 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05226 Seca-Chr1 155571954 155573444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05226 24 480 Cytochrome P450 AT2G27690 58.458 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05226 K20624 - gmx:102662117 743.806