Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05224 ATGAGCACGATGGATGTGGAATTGGAGAAACGCTGTGCCTCCTCCTTGTCTTCGTCTTCTTCTTCGAGTGCGTCGGAGGAGGAGGAGCGGGTGGATCGGCTCGTGGAGACGGAGGAGATTGAGGCGGCGGAGACTCTGGCACAGTTGGCAATGCGCCAGATTGACTCCGCCGAGAAATGGTGCACCAAACGAGACAGCACCCGAGTCACGCGCGAGTCACCGACTCTTCACTCGGATCCCTCTCCCTGTCCCCTTGCCATTGGGGGCCAAGCTGTTGCAGGTCAGCAGCTAGATGAAAAAAAATCCCCTACTACAGACGTAGAAACAGAAAGGATTCAACAGAATGACTGGTTAGGACACATGAAGGTGGACCAGGATGCTGATTTACCTAAGACTACAAGTTACTCTTCGGGTCGCTGCAACAAGTCAAGGCGTAATTTAACTGAGGAAGAAAAAGAGGCAAGGAGGATACGCAGGGTATTGGCAAATAGAGAGTCAGCTAGGCAGACAATTCGCCGTAGGCAGGCTCTGAGTGAGGAGTTAACCAGAAAAGCTGCCACTTTAGTGATGGAGAATGAAAACCTAAAGAAGGAGAAGGAGTTGGCTTTGAAAGAGTATCAATCTTTGGAGACTACAAATAGACACTTAAAGGCACAGATAGCCAAGTCAGTAAACACTGAAGTGGAGAAAACTCCTGTTGAGCAGGAGTCATCTGTGGCTGAGGTAACACCTGTGTCTGGCAGTAGTCCATGGTTTCTTTATAACCATTTTCCAGTTACACAGTTATTCTGGCCTTCCATCCTCCAGTCTTCTAATCCAGTTCAATTACAACATACACCATTTAATTCCATTGCCATTCCACCAAATGTTTATGTGCCTTCTTCTGAGTCTGAATCATGTCACAAGCAAAATAACCTCATAAATGACAATCGAACTCAAAATCCGTTGTACATGTTTCCATGTCCTTGGTTATACCCTCTTCCAGAATATGGAAATGGACTATCACCGCCTTCCAGTGGCCATAAACAAGATAAAATTCCTCTAGGTAAACAATGTAGTACTGCTTTATCTTTAAATACAATGGCAAATGTGGATTATCAAGCAGCACTACCTATCAAACTTAAAACAGAAGCCAGATCTATTGATGACTCTGATTGTGCCACTCTGAGTTTTTCTTCAGATGGAGGTGAGCTGAAAACAGGAGGTCACATTATAGAAAAGTTCCATGGACAGGCATTTGGTTGTAATGGTCATGCTTCTGCTATCAAGCAAGAACCTGAGCTTCAATTACATTCTGCTCCCAGCGCTGAGGGATCTTCTTCAACAGCTTCTCATATTGCGACGTCTTCGGTGGAAAAGAAGCAAGAACAGTTCATATGCCCAGGTAAAAATCTAGTGGATGCAGTTGCTGCAGCAGAGGCCAGAAAGAGGAGAAAGGAACTAACAAAGCTAAAAGGCATCCATAATCGCCAGTCCCGGATGGAGTGTTGA 1491 0.4561 MSTMDVELEKRCASSLSSSSSSSASEEEERVDRLVETEEIEAAETLAQLAMRQIDSAEKWCTKRDSTRVTRESPTLHSDPSPCPLAIGGQAVAGQQLDEKKSPTTDVETERIQQNDWLGHMKVDQDADLPKTTSYSSGRCNKSRRNLTEEEKEARRIRRVLANRESARQTIRRRQALSEELTRKAATLVMENENLKKEKELALKEYQSLETTNRHLKAQIAKSVNTEVEKTPVEQESSVAEVTPVSGSSPWFLYNHFPVTQLFWPSILQSSNPVQLQHTPFNSIAIPPNVYVPSSESESCHKQNNLINDNRTQNPLYMFPCPWLYPLPEYGNGLSPPSSGHKQDKIPLGKQCSTALSLNTMANVDYQAALPIKLKTEARSIDDSDCATLSFSSDGGELKTGGHIIEKFHGQAFGCNGHASAIKQEPELQLHSAPSAEGSSSTASHIATSSVEKKQEQFICPGKNLVDAVAAAEARKRRKELTKLKGIHNRQSRMEC. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05224 496 MobiDBLite consensus disorder prediction 433 448 - -
Seca1g05224 496 MobiDBLite consensus disorder prediction 62 84 - -
Seca1g05224 496 SMART brlzneu 151 215 IPR004827 GO:0003700|GO:0006355
Seca1g05224 496 Coils Coil 140 160 - -
Seca1g05224 496 PANTHER G-BOX-BINDING FACTOR 3-RELATED 20 277 IPR044827 GO:0003700|GO:0006355|GO:0043565
Seca1g05224 496 MobiDBLite consensus disorder prediction 126 151 - -
Seca1g05224 496 Coils Coil 178 219 - -
Seca1g05224 496 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 153 216 IPR004827 GO:0003700|GO:0006355
Seca1g05224 496 SUPERFAMILY Leucine zipper domain 155 210 IPR046347 GO:0003700|GO:0006355
Seca1g05224 496 MobiDBLite consensus disorder prediction 1 33 - -
Seca1g05224 496 MobiDBLite consensus disorder prediction 429 448 - -
Seca1g05224 496 CDD bZIP_plant_GBF1 156 207 IPR045314 GO:0003700|GO:0006355
Seca1g05224 496 Pfam bZIP transcription factor 151 213 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05224 Seca-Chr1 155554591 155559577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05224 137 496 bZIP Transcription Factor Family AT1G19490 35.310 4.44e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca1g05224 bZIP_1 9.5e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05224 - - gmx:778152 629.017