Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05222 ATGAAGGTGATCGCTGCCTATTTGCTTGCCGTCTTGGGAGGGAACACAACTCCTTCCGCCAATGACCTTAAGGACATACTTGGCTCCGTTGGAGCTGAAGCGGATGATGACAATATCACTCTTCTCTTGTCTGAACTGAAGGGGAAAGATATAACAGAGGTTATTGCCGCCGGTAGGGAAAAGTTAGCCTCAGTGCCTTCTGGTGGTGGTGCCGCCGTTGCCGTGGCCGCTGCTCCTGGAGGAGGCGGTGGTGGTGCTGCACCAGCAGCCGCTGAATCGAAGAAAGAGGAAAAGGTGGAAGAGAAGGAGGAATCAGATGATGATATGGGTTTCAGTCTGTTTGATTAG 348 0.5201 MKVIAAYLLAVLGGNTTPSANDLKDILGSVGAEADDDNITLLLSELKGKDITEVIAAGREKLASVPSGGGAAVAVAAAPGGGGGGAAPAAAESKKEEKVEEKEESDDDMGFSLFD. 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05222 115 MobiDBLite consensus disorder prediction 76 115 - -
Seca1g05222 115 Hamap 50S ribosomal protein L12 [rpl12]. 2 115 IPR027534 GO:0003735|GO:0005840|GO:0006414
Seca1g05222 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
Seca1g05222 115 Gene3D - 1 59 IPR038716 -
Seca1g05222 115 Pfam 60s Acidic ribosomal protein 18 114 - -
Seca1g05222 115 FunFam 60S acidic ribosomal protein P2 1 59 - -
Seca1g05222 115 CDD Ribosomal_P2 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05222 Seca-Chr1 155529606 155531098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05222 1 115 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 65.217 4.82e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05222 K02943 - qsu:111996733 133.265