Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05220 ATGGGTTCATTCTCTGGCACTTGTGAAATAGTTGAAGCAAGGGAGGAGTCCAATTCTCAGTATAACAAGTCAGAGAAAAATCAGAAGCCTTCAGTGCTGAACCTGGGATACAAGGATAATCTAGATGATGATATTAATAAGCTGTTTGAATCAATTGCTATTAAATCTGCATCAAGGGATTTGAGCCTTTTACAAGATGATGCATTAAAAAAGCCAATGACGACGGGTGTCCCTCGGTCCCCACGAGTCGGGACTTCTGAGCCTGTTAATTTGAAGCAGGCATTGAGAGACCTTTGTATATCTAAGGCATCAGAAATGGCTGCTATGAAACGATTATCAAAGTCAACAGCTTCTCCAAGAATATCAGAGGCTGGGAAGATACAGACACTGTACAGTTCAGTTGTAGTTGAGAGTAAGGGGCATAGAATGGAAAAATCCCTAGTGCCAGAAAAAAGCAAGTCACCCTCATTGGAGGAAACATCTCACTCTCATCAAACTGGCCAAATCACATCATCAAGCCAAACTCTTCATTCTTCTCTGGAAAATCCTGTTGCAACTACTCATGATTCAGCATTTTCATCAAGTAAAGCTGGGGTTCAATCACAGCGTGTGGTACCTGTTCAAGCAGGAAAACAAACATCTGCATCTTCTCCATCTCTTTATAATACATTTGGAAGCAAATCAGAGTTGCCCAAAAATGCTTCTTCCCCTAAAAAGTTAGGAAATAAAGCATCCGTGTCAAATACTGGGCGGAAAGGTAGGTCTCAAACAGTGTCTTCTTCATCTACTTCTGTAAATGGCAGCAAAGTTAACAAACTGCCACGCCATGCCTCCCGTACAGTTAAAACGGTCATCAAGAACAAGAATCTAAGTAAGAAGAAAATAAAGGAGGATTCAGGTTCTGCCTCATGTGATCCTACATCCAATGAAGGGAATAAGTCAGTTCCTGGCACAGCTCAGCTGAATACAAGGGAAGAAAAAAACAAAGATATTATAGCATCAGACTCAACCAATCCTGCAAATGGAGTAAACTTGAGTAATGTGCACTCTGGTCCAAATAAACCTGATTTGGCATCAACTGGTGGTAATAAAAGCAAAGCAGTTGCAAAAGTGAAGAAGACCAAGTTGAAAGAGCAACTTGAATTTTCACAAAGTTCAAAGAGTAGTCAAGGTGAGTACAGTAGTAGTACAAGTACCAGTGATGAGAGCAATTTGAGTGGCTCAAGTTGTGGCTCCAGGCCTCACATGTCAAAGGATGTTAGGTGGGAAGCCATTCGACATGCTCAAATGCAGTATGGAGTCTTGAGCTTGAGACACTTTAATCTTTTGAAGAAACTTGGTTGTGGAGACATTGGGACTGTATACCTTGCTGAACTAATTGGCACTAGTTGCTCGTTTGCTATTAAGGTCATGGACAACGAATTTTTGGCAAGAAGGAAGAAAATGCCTAGGGCTCAAACTGAAAGAGAAATATTAAGGATGCTGGATCATCCATTTCTTCCCACACTGTATGCGCAATTTACATCAGATAATCTGTCATGTCTGGTCATGGAGTATTGTCCAGGTGGAGATCTTCATGTTCTACGGCAGAAGCAGCTTGGTAGAAGTTTTTCGGAGCCAGCAGCAAGGTTTTATGTTGCTGAAGTTCTTCTCGCTTTGGAGTACTTGCACATGCTCGGAGTTGTTTACCGTGATTTGAAACCTGAAAACATTCTTGTTCGGGAAGATGGCCACATTATGCTCACAGATTTTGATCTGTCACTGAGGTGTGCTGTTAGCCCAACCCTCTTGCAATCATCTTCTGATGTTGACCCTGCAAAAATTTCTGGTCTTAGTGCACAATCAAGTTGTATCGAGCCATTCTGCATTGAACCATCATGTCAAGTTCCATGCTTCAGCCCTAGATTCTTACCTGCTGCTGCAAAAGCAAGGAAATTAAAAATTGATCCTGCTGCCCAGGTCAGATCACTGCCACAGCTTGTGGCCGAGCCCACTGATGCAAGATCAAACTCATTTGTAGGTACACACGAATACTTGGCCCCTGAGATCATCAAAGAAGAGGGACATGGAGCTGCAGTTGACTGGTGGACATTTGGCGTTTTCCTTTATGAGCTTTTGTATGGTAGAACACCCTTTAAAGGTTGTAACAATGAAGAAACATTAGCGAACGTGGTGTTGCAAGGTCTTAGATTCCCTGATAGTCCATTTGTTAGTTTCGAAGCGAGGGATCTGATTAGAGGTTTGTTGGTGAAAGAACCTGAGAACCGTTTGGGTTCAGAGAAAGGTGCTGCTGAGATTAAACAGCACCCCTTCTTCGAGGGCCTTAACTGGGCCTTAATTCGTTGTGCTATCCCACCAGAACTTCCAGAGTTTTGTTATTATGAAGTTTCAGACATGACCTTACAGGGCAAGGGTGCTAAGTATTTAGAGTGTAAAGCAGGAGAGAATGTGGAATTCGAGTTGTTTTAA 2469 0.4228 MGSFSGTCEIVEAREESNSQYNKSEKNQKPSVLNLGYKDNLDDDINKLFESIAIKSASRDLSLLQDDALKKPMTTGVPRSPRVGTSEPVNLKQALRDLCISKASEMAAMKRLSKSTASPRISEAGKIQTLYSSVVVESKGHRMEKSLVPEKSKSPSLEETSHSHQTGQITSSSQTLHSSLENPVATTHDSAFSSSKAGVQSQRVVPVQAGKQTSASSPSLYNTFGSKSELPKNASSPKKLGNKASVSNTGRKGRSQTVSSSSTSVNGSKVNKLPRHASRTVKTVIKNKNLSKKKIKEDSGSASCDPTSNEGNKSVPGTAQLNTREEKNKDIIASDSTNPANGVNLSNVHSGPNKPDLASTGGNKSKAVAKVKKTKLKEQLEFSQSSKSSQGEYSSSTSTSDESNLSGSSCGSRPHMSKDVRWEAIRHAQMQYGVLSLRHFNLLKKLGCGDIGTVYLAELIGTSCSFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRSFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVSPTLLQSSSDVDPAKISGLSAQSSCIEPFCIEPSCQVPCFSPRFLPAAAKARKLKIDPAAQVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGCNNEETLANVVLQGLRFPDSPFVSFEARDLIRGLLVKEPENRLGSEKGAAEIKQHPFFEGLNWALIRCAIPPELPEFCYYEVSDMTLQGKGAKYLECKAGENVEFELF. 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05220 822 CDD STKc_phototropin_like 438 790 - -
Seca1g05220 822 FunFam serine/threonine-protein kinase D6PK-like 667 790 - -
Seca1g05220 822 MobiDBLite consensus disorder prediction 159 273 - -
Seca1g05220 822 ProSiteProfiles Protein kinase domain profile. 440 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05220 822 Gene3D Transferase(Phosphotransferase) domain 1 520 588 - -
Seca1g05220 822 FunFam serine/threonine-protein kinase D6PK-like 524 591 - -
Seca1g05220 822 MobiDBLite consensus disorder prediction 141 415 - -
Seca1g05220 822 Pfam Protein kinase domain 669 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05220 822 Pfam Protein kinase domain 441 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05220 822 PANTHER FLIPPASE KINASE 1-RELATED 195 791 - -
Seca1g05220 822 Gene3D Phosphorylase Kinase; domain 1 438 519 - -
Seca1g05220 822 SMART serkin_6 440 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05220 822 MobiDBLite consensus disorder prediction 301 322 - -
Seca1g05220 822 MobiDBLite consensus disorder prediction 275 289 - -
Seca1g05220 822 FunFam Serine/threonine-protein kinase D6PK-like 438 523 - -
Seca1g05220 822 MobiDBLite consensus disorder prediction 381 413 - -
Seca1g05220 822 Gene3D Transferase(Phosphotransferase) domain 1 665 786 - -
Seca1g05220 822 MobiDBLite consensus disorder prediction 333 360 - -
Seca1g05220 822 SUPERFAMILY Protein kinase-like (PK-like) 415 795 IPR011009 -
Seca1g05220 822 MobiDBLite consensus disorder prediction 141 158 - -
Seca1g05220 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 561 573 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05220 Seca-Chr1 155513279 155516694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05220 378 822 AGC Kinase Gene Family AT3G52890 77.342 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca1g05220 Pkinase 5.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05220 - K08286 gmx:100792120 1253.81