Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05214 ATGGACTTCCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCAGAATCCCATCAACACCAACAATCATCTGCACCTGTTCTCCCTTTGTTTGTACCTGAACCCAACACCAAAGTCAGCACCTTGTCAGATTCAACATTACCACCACCACCTACTATTACTAACAGATTTCCCAGGATGGGGAGTTACTTCAGCTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGCGCTGCTGTTCCTCCTGAACTTCTTCAACCAATCAAGAAAAGCCTTCTCCATTCACATCCATTTTTCCTTCATCACCCTCTCCAACATTATCAACCTGCTTCAGTGTTGCAATCAGGGTACTGGGGAAGAGCGGCCATGGATCCAGAGCCTGGCCGTTGTCGGAGGACCGACGGCAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGCCGGACAAAAGTACTGTGAACGCCACATGCATCGTGGTCGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCTGGTGTTGGTGGTGGTGGATCTTTCGGTGCTTCATCCTCTATTTCTTCACCACCTCTGGCTACTGCTTCACTCAAATCTCCTTTTGATCTCCTTCACCTTAATGAACGTTCTTCTGGGACCAAGAGTGAGGACAAGAGCTTGTTTGAAAGCCAAGATCATGTGGGTGGGGATGGAAGATCAGGAGGCCATATGCTGAGGCATTTCTTTGATGATTGGCCACGATCATTACAAGAGACTGACAACACTGAAAACAATGCTGGTGGAAGGATGAACTCAGCCACATGCCTCTCTATTTCAATGCCTGGAAATGCTTCTTCTTCATCAGATGTGTCATTGAAATTGTCCACTGGGTATGGAGAGGAACCGTGCCCAAGAAATGAGAATGTGGACCTAGAAGCAGAGCAACAACAACTGCAGTTGAATTGGGCCGGTGGATGGGCTTCAGCTAATCAAGTGGCTTCAATGGGAGGACCACTTGCTGAGGCACTTAGATCATCCACTACAACTTCCTCACCCACTAGTGTTCTGCATCAGTTGCCTCGTGGTTCTGGTTCCGAGACCAGCTTCATTAGCACCTAA 1161 0.4832 MDFHLKQWRNQHESEEQHSTKMPKLLPESHQHQQSSAPVLPLFVPEPNTKVSTLSDSTLPPPPTITNRFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSHPFFLHHPLQHYQPASVLQSGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSAGVGGGGSFGASSSISSPPLATASLKSPFDLLHLNERSSGTKSEDKSLFESQDHVGGDGRSGGHMLRHFFDDWPRSLQETDNTENNAGGRMNSATCLSISMPGNASSSSDVSLKLSTGYGEEPCPRNENVDLEAEQQQLQLNWAGGWASANQVASMGGPLAEALRSSTTTSSPTSVLHQLPRGSGSETSFIST. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05214 386 MobiDBLite consensus disorder prediction 174 210 - -
Seca1g05214 386 PANTHER GROWTH-REGULATING FACTOR 5 29 300 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca1g05214 386 MobiDBLite consensus disorder prediction 355 386 - -
Seca1g05214 386 MobiDBLite consensus disorder prediction 231 246 - -
Seca1g05214 386 SMART QLQ_2 74 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca1g05214 386 MobiDBLite consensus disorder prediction 354 386 - -
Seca1g05214 386 MobiDBLite consensus disorder prediction 231 254 - -
Seca1g05214 386 MobiDBLite consensus disorder prediction 1 31 - -
Seca1g05214 386 Pfam QLQ 76 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca1g05214 386 ProSiteProfiles QLQ domain profile. 75 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca1g05214 386 ProSiteProfiles WRC domain profile. 144 188 IPR014977 -
Seca1g05214 386 MobiDBLite consensus disorder prediction 1 25 - -
Seca1g05214 386 Pfam WRC 145 187 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05214 Seca-Chr1 155406722 155410308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05214 1 373 GRF Transcription Factor Family AT3G52910 50.253 5.18e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca1g05214 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05214 - - gmx:100814842 582.022