Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05211 ATGGCTCAAAAGTTCTTACACGAGCTACTCAAGGAGGATCAAGAACCATTCCTTCTTAACAAGTACATTTCCGATAGGCGTAGCCAAATAATAAAAAGGCCTTCTTCAAAAACCACTTTGCAACCCAAAAAACGCAAATCAATCAATCCAAACCCAATAAATCTCTGTAAAAACGCTTGCTTTTTCTCCTCCACAACCACCCCAGACCTTAGAAAATCTCCATTTTTTGAATTTGCATCCCCTGCTAAAAGCCCCTGCAAATCCCCCAACAACATTTTCCTCCACATCCCTTCACGAACAGCAGCTCTTCTTCTCGAAGCAGCTCTCAGGATCCAGAAACAATCATCAAGTTCCAAAACTAAAACCAAAGCCAAAGGGTTGGGGCTATTCGGGTCCTTATTCAAGAGACTAACACAACGAAACCACAAGAGGGAAATAGAGTGTGCCAGCAATGTGTCTGTGAAGGATATCTTGGAGTTTGATTCTTCTATTGTAGGGTGTAGAAAACACTCCAATGAGGTGGGGTTTCATTGTTCTTCCAATGGCAGACCTAGTAGTGCTGTTTGGTCAGAGAGCAACGAAGATAAATCTCTGGACATGGAAACATCAAGCAGTGGTCACTCTGATGACTCTGAAGAAAGGGTTCATTTTGTAACCAATCAAGAACAGTGTGCTTGTTGTCACCATGGTTTCTGTGAAAGCCCTTTCCGTTTTGTTCTTCAAACCAGTCCTTGCTCCGGCAGCCACACGCCGGAGCTACTGTCGCCGAGTCGCCACATAACAGAGGACAAAGAAAGTAATGTTGGTGAGAGGCTCAATAAATTGGAATCAGGGGAAGAAGAGGAAGAAGACAAGGAACAGTGTAGTCCAGTGTCTGTTTTAGACCCACCCTTTGAGGATGATGAGGAAGGGCATGGAAACGATGATGGTTATGATTTGGAGAGCAGCTATGCCATTGTACAGAGAGCTAAACAGCAGCTATTGTACAAGCTTCGCAGATTTGAGAAACTTGCAGAGTTGGATCCGGTAGAGCTCGAGAAAAGAATGCTGGATCAAGATGAGGATGAGGATGGGGATGAAATATTTATGGAAGAAGAGGATGATCTTGAAGATAATGATAGTGAAACATCTTATAAAGAGAATGACTTTAGAGAACTAGTTTTGGATGCTGTATGCCAGAGAAGGGTCCATGACAGACAGCAAATCCCACAAGAGTTTAAGAAACTGATTTCTGATCTCATTGTGGAAGAAGAGAGGGAGCTTAATTGCTTAGAAGATAGGGAGGTGGTGATAAGAAGGATATGCAAGAGGCTGGAATTGTGGAAAGAAGTGGAGTCTAATACAATTGATATGATGATAGAAGAGGACTTCTCTAGAGACAATGGTGGGTGGAAGAAAAATGTAGAACAGATAAGAATGATGGCAGGGGAACTTGAGCTTGCTATCTTTGGCTTTCTAGTGGAGGAATTTTCAGAGGAACTGGTATGTTGA 1491 0.4272 MAQKFLHELLKEDQEPFLLNKYISDRRSQIIKRPSSKTTLQPKKRKSINPNPINLCKNACFFSSTTTPDLRKSPFFEFASPAKSPCKSPNNIFLHIPSRTAALLLEAALRIQKQSSSSKTKTKAKGLGLFGSLFKRLTQRNHKREIECASNVSVKDILEFDSSIVGCRKHSNEVGFHCSSNGRPSSAVWSESNEDKSLDMETSSSGHSDDSEERVHFVTNQEQCACCHHGFCESPFRFVLQTSPCSGSHTPELLSPSRHITEDKESNVGERLNKLESGEEEEEDKEQCSPVSVLDPPFEDDEEGHGNDDGYDLESSYAIVQRAKQQLLYKLRRFEKLAELDPVELEKRMLDQDEDEDGDEIFMEEEDDLEDNDSETSYKENDFRELVLDAVCQRRVHDRQQIPQEFKKLISDLIVEEERELNCLEDREVVIRRICKRLELWKEVESNTIDMMIEEDFSRDNGGWKKNVEQIRMMAGELELAIFGFLVEEFSEELVC. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05211 496 MobiDBLite consensus disorder prediction 194 214 - -
Seca1g05211 496 MobiDBLite consensus disorder prediction 248 311 - -
Seca1g05211 496 MobiDBLite consensus disorder prediction 182 214 - -
Seca1g05211 496 Coils Coil 407 427 - -
Seca1g05211 496 PANTHER OS04G0572500 PROTEIN 1 494 - -
Seca1g05211 496 MobiDBLite consensus disorder prediction 256 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05211 Seca-Chr1 155316724 155320576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05211 3 495 TRM (TON1 Recruiting Motif) Superfamily AT2G36420 35.397 6.95e-58 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05211 - - gmx:100814311 644.425