Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05208 ATGCAACGGATTGGGGTATCAAGCAGCAAAGGCTCCTCCTCCACTGGGCGTCACCCTGTGTACCGTGGGGTGAGGCGTAGGAGCAGTGGCAAATGGGTGTCTGAAATTAGAGAGCCAAAGAAACCAAATAGGATTTGGTTAGGGACATTTCCTACACCTGAAATGGCAGCTATTGCTTATGATGTTGCTGCTCTTGCTCTTAAGGGTAAGGATGCTGAACTTAACTTCCCTAACTCAGCTTCTTCTTTTCCTGTCCCTGCTTCTTCCTCTGCTCGTGATATTCAGCTCGCTGCTGCTGGTGCTGCAGCTGCTCTTGGTGCAGCAAAAGATGCATTAACTGCTAGTACTGTTGAAGGAGGGAATAGTAATAATGTTTCAGTGGCACAAGAGATTTTTGCTGCAGAGGAGAATATTAATATGAATGAGTTTATGGATGAGGATTTGATCTTTGATATGCCAAATGTTCTGGTTAATATGGCGGAAGGAATGCTCCTTAGTCCTCCTCGTTTTGACATTGCTACTACTGAGTATGTTGACATGGGAGAAGAACAAAGCCTCTGGAGTTTCCCTTATTAA 576 0.4497 MQRIGVSSSKGSSSTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAIAYDVAALALKGKDAELNFPNSASSFPVPASSSARDIQLAAAGAAAALGAAKDALTASTVEGGNSNNVSVAQEIFAAEENINMNEFMDEDLIFDMPNVLVNMAEGMLLSPPRFDIATTEYVDMGEEQSLWSFPY. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05208 191 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Seca1g05208 191 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Seca1g05208 191 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 15 188 IPR045277 GO:0003700
Seca1g05208 191 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Seca1g05208 191 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Seca1g05208 191 MobiDBLite consensus disorder prediction 1 33 - -
Seca1g05208 191 MobiDBLite consensus disorder prediction 1 16 - -
Seca1g05208 191 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Seca1g05208 191 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Seca1g05208 191 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Seca1g05208 191 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Seca1g05208 191 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05208 Seca-Chr1 155295160 155295735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05208 5 190 AP2-EREBP Transcription Factor Family AT2G36450 63.158 4.10e-62 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca1g05208 AP2 9.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05208 - - gmx:100799620 243.432