Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05206 ATGGAGGATCATCATCACCATCACCATCATCACCATGAACAGCAACAACAGTACGGTATCTCTGATCTCAGACAACTCGTGAATGGACCAAGGTCGACGACTCATTTCCCTTCAATACCACCGCCACAACCCACGGTGGAGCTATTCCCCGCCGGCCACCCCAATCTGACGGCGGCAGCAACTCATCACTATGAGATGATGATGTTTGGTCGTCAAGTAGCTGAGATAATGCCTCGCTGCCTTCATGACTTTGCTGCTTCAACTGATTCTGTTACTGCTGCTGCTGTTGCTGCTGCTAATAATACTAGTATCACTGTTGCCACTCCAACCACCAACAGTGCTTCAACTCCTTCTCTTAGTGGTTTAGAGGCTGAGACTGGTGGCTGCATAGGTGTTGATGCTTCCACAGGAAGATGGCCAAGACAAGAGACTCTTACTCTTCTTGAGATCAGATCTCGTCTCGACCCTAAATTCAAAGAGGCTAATCAAAAAGGTCCTCTCTGGGATGAAGTTTCTAGGATCATGTCTGAGGAACATGGATATCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAACCTTTACAAATATTACAAGAAGACAAAGGAAGGAAAAGCAGGAAGACAGGATGGGAAGCATTATAGATTCTTTCGCCAACTTGAAGCCTTATATGGTGAAAACAGTAACACAAATTCTGTCCCAGAAAACAATTTTGGTAGCAGCAACCTCCGTTTCCAGACCAGCAATAACCACACACCCTCTCAAACAAATCAAGAAATGTTTCAGTCTCAAAAGCATTGTGATAGCCTCAGCCTCACTAACTCCACTGACTTTGACACCACATCATCAGATGACAATGATCATAGCACTGATCAGGGACTCAGGGAAAATGACTCCATGGAGAAGAGGAAAAAGAGGGTGAGTGGAAGAAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAAATGAGGAAGCTTGTGGAGAAGCAAGAGGAATGGTTGGATAAGCTCACCAAGACACTGGAGCAGAAGGAAAGGGAGAGGGTGTTAAGAGAGGAAGAGTGGAGGAGACAAGAGGCAGAAAGGTTGGAGAGGGAACACAAGTTTTGGGCTAAAGAGAGGGCATGGATTGAAGCCAGGGATGCTGCTTTAATGGAGGCATTGCAAAAATTAACAGGAAGTGAGATAAAGAGTATTCAAAATCATTCTCCTGAGGGTGTAATGGCAGGTGGAATTCAAAACCAAAGTGAAAACCAAAACGAAGATGGAAGTGAAATACTGAATAGCACTGCCAGAGGTGCTGAAAGCTGGCCAGAATCTGAGATTGCAAGGCTTCTACAGCTGAGAGCTGAGATGGAGACAAGGTTTCAGCAAAGTGGATGTTCAGAAGAGGTTATGTGGGAGGAAATAGCAAACAAAATGGCTTGTTTTGGATATGAAAGGACTGGTTTGATGTTCAAAGAGAAATGGGAAAGTATAAACAATTATCCAAGGAATGTCAAGGAAGGGAACAAGAAGAGAAAGGAAAACTCAAGAGGTTGTTTTTACTTTGATAACAATGACCAGTCTTCTCTATATACTACTCAAGGAGGTGCCTATTGTGATATCAATGATCAAAGGCAAGAGACTATTGGGAGGCTACAGACAAATGATGGTTCTTCACCTTCCAATTCGAATGTTGGAAATGCAGTTGCGGCAGAGAGCTGTTTCCCCTTCTTGATGAGTGAGGGTGGAAATTTATGGGAGAATTACAGTTTAAAGGTTAATAAAGCAAACCAAAACCAATGA 1794 0.437 MEDHHHHHHHHHEQQQQYGISDLRQLVNGPRSTTHFPSIPPPQPTVELFPAGHPNLTAAATHHYEMMMFGRQVAEIMPRCLHDFAASTDSVTAAAVAAANNTSITVATPTTNSASTPSLSGLEAETGGCIGVDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNTNSVPENNFGSSNLRFQTSNNHTPSQTNQEMFQSQKHCDSLSLTNSTDFDTTSSDDNDHSTDQGLRENDSMEKRKKRVSGRSWKVKIKDFIDSQMRKLVEKQEEWLDKLTKTLEQKERERVLREEEWRRQEAERLEREHKFWAKERAWIEARDAALMEALQKLTGSEIKSIQNHSPEGVMAGGIQNQSENQNEDGSEILNSTARGAESWPESEIARLLQLRAEMETRFQQSGCSEEVMWEEIANKMACFGYERTGLMFKEKWESINNYPRNVKEGNKKRKENSRGCFYFDNNDQSSLYTTQGGAYCDINDQRQETIGRLQTNDGSSPSNSNVGNAVAAESCFPFLMSEGGNLWENYSLKVNKANQNQ. 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05206 597 ProSiteProfiles Myb-like domain profile. 438 496 IPR001005 -
Seca1g05206 597 Coils Coil 329 356 - -
Seca1g05206 597 SMART sant 435 498 IPR001005 -
Seca1g05206 597 SMART sant 135 198 IPR001005 -
Seca1g05206 597 PANTHER FI21293P1 110 559 - -
Seca1g05206 597 MobiDBLite consensus disorder prediction 282 306 - -
Seca1g05206 597 FunFam Trihelix transcription factor GT-2 439 501 - -
Seca1g05206 597 CDD GT1 439 503 - -
Seca1g05206 597 MobiDBLite consensus disorder prediction 228 308 - -
Seca1g05206 597 FunFam trihelix transcription factor PTL-like 139 201 - -
Seca1g05206 597 MobiDBLite consensus disorder prediction 228 281 - -
Seca1g05206 597 ProSiteProfiles Myb-like domain profile. 131 196 IPR001005 -
Seca1g05206 597 CDD GT1 138 203 - -
Seca1g05206 597 Pfam Myb/SANT-like DNA-binding domain 138 224 IPR044822 -
Seca1g05206 597 Pfam Myb/SANT-like DNA-binding domain 438 523 IPR044822 -
Seca1g05206 597 Gene3D - 139 201 - -
Seca1g05206 597 Gene3D - 439 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05206 Seca-Chr1 155240358 155243513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05206 13 592 Trihelix Transcription Factor Family AT5G03680 45.338 1.64e-145 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca1g05206 Myb_DNA-bind_4 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05206 - - gmx:100813245 887.871