Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05198 ATGGACATGGAGAGTGCACGTAGATCGTTTGAAAGATCTAGAGAACCGGGCTCCAAGAAGCCCCGGTTGATCGACGAGCTGGACAGAGGGTCGAATACACGACCATTTCCTCAGAGACAAGCTGGGTTTCGAACCAACGACAGAGACTCTGAAAGCAGCGATTCTGGTCGGGTTGTTGGGTACCAGCCACAGCCACCGCCTCACCAAGAGCTCGTGACTCAGTACAAGACCGCACTTGCTGAGCTCACTTTCAACTCAAAGCCAATAATTACCAATTTGACTATAATTGCTGGAGAGAACCTGTCTGCTGCCAAGGCAATTGCTGGGACTGTTTGTGCTAACATTCTAGAGGTTCCAACTGAACAAAAGCTGCCATCTCTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGAGGGACTATATAAAATACTTCGCTGCCAGGCTACCTGAGGTATTCTGTAAGGCATACAGACTGGTTGATCCTTCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTATTTCCTCCTCAGACCCTTCAGGTAATTGAGATGGAACTTGGCTTCACTCCTGCAGTCAATGGTTCGGCTTCTGCATCTGCTACACTCAGGAGTGATTCGCAGTCACAACGCCCGCCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTAGTTAATGATCCAACTGGAGCTATTTTAAACTCAAATGAGGACTCAGAGAGGCCAGATAGAGCTTTGGGTGCTGCACGGCCATGGCTGGATCCTAGGGTTAGCATGCATAATAATCAGCACACTCATCAAGATGAATTTAACGATTCTGTTCCTGAAAAGAGAATTGGTGGATCCTATGGAGGCAATGAATATAGTTCTGGTATTTCAAGTAATTTGGGCTCAGGAGTTGGAAGAACTGGAAGTAGGCTCATTGGTGGTGTTGCTGAGACCATATCTGGGCAAAGAAATGGTTTCAGTCTCAAACATGGATTTTCAAATCACGAAGCACCGAAGTCCATGAATTCAGATGCACATCGTCCGCCAACTCAAACAGTAACTAACATAAGGAGCAGTGTGTTGTCAAATAACTGGAAAAATTCTGAGGAAGAGGAGTTCATCTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCCAATATCTCTAGCAATTTGAGCACAGACCCATGGATGGCTGACGATGAAAATTTGGAAGGTGAAGATCACCTCCAAATCACACACCCTTATGGGGCAAAGGTTGAAAGAGAAACATCCACTGTTAAGAAACAACTACCTGCATTTGGGGGCCATTCATCATTATCATGGCAATTGCAGAAGCAACACCCAAGTGATAAGTTGAAACTGAAGCCAGGTCACTCAGAAGGATTTGTTCCTGCTCTTAGTGGCTTACCCAGAAATACATATTCTTCAGATGTCAGGATGAGGAATCGGTCTTTTATGCCAAGTGCAACAATAGGAATGGCCAAAATTATGGGACAGCAGCAATTTGATTCTGGGGGAGCTGAATCCCCTTCTGAACAGTCACCTTTGCGACAACAGTCTCCATCCCTGTCAGTATCCGTACACCCTAATTCAGTGCAAAATTTTGCTGAGCAAGACTGTCGTTTGACTCCTAAAACATCTCAATTTTTGGGAGGTCTGCAAAACCAATGTATTAGAGATCCCTCACCTGCCCTTCTTCCAAATGTTCAGGCTGGTTACTTAAGAAAATCACAGGAAAAGGACACGCAGGGTCCATTATCTTCTGTACCTTCTTTGCAGCCAAGGCTTCAGCAACAGCAGCTTGGCCCTTCTCATATTGATGCTACTGTTAAAACTAAGAAGCCACCCCACTCTAAAGTTTCTATAGCCAGAGAAACTTCAGAAAAGTCAGCCACAAATAGTCTTTCAACTGCATCTGTGAAGAGTGGAATCATCTCCAAAAAATCAATTACCAGTGGTCTTCCTACTACAAATAGTCTGGATGCAAGGAATCTCCCATCTCAGTCAGGTGGTCGGCCTACTAGGTCTGATGGTCGTTCTCCTACCGCGATAATTTCTTCAGGGTCTACAGCATCACCATCTTCATCAGGTCCTCTGAATGATTATTTATCTACTCTGCCAAAAATACCTCAAGGAAAGACTGGACAATCACAAAGGGATTCTACTAAACCACCTGCATCTTCTAAAGTGAGCAGTGCCTCAGCTCCGAGCTCAAATGTCACCAATAAGAATACCATAAACCCAATTGCAAACCTTTTAAGCTCATTAGTTGCAAAAGGTTTGATATCTGCGGAAGCAGAGTCGGCAAGTACAGTTCCAAGTGAGATTCTGATGCAATCGGAAGACCATACTGAAAGCATTACCACTAGTTGCTCTTTGCCGGCTGCTGCTTCAGTTCCTGGTTCTGCAGCTGTTCCAGTACCATCTTCCAGAGATGAGGTAGATGCTGCTGCAAAAGCCTCTCTTGCCTTATCTCAATCAACAAGCACTGAAATAAAAAATCTCATTGGCTTTGATTTTAAACCTGATGTGATTCGAGAAATGCATCCACATGTTATCAGGGAATTATTGGATGATCTCCCACATCATTGCAGAATTTGCGGTGTTAGGCTTAAACAGCAAGAACAGTTCAATAGACACTTGGAGTGGCATGCCACAAGAGAAAGAGAACAAAGTGGTCTAATTACAGCGTCAAGAAGATGGTATGCAGAGTCAAATGACTGGATTGCTGTCAAGGTTGAATATCCATCTGAGCCTGAGATGTCTGATTCTGTGGATGTATATGACAATACAACAGACACAAGTCAATTTGATACTATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGCGAGCTATTTGTAGATGTGTACTGTCAGGAAACGGACCAGTGGATGTTCAAAGGGGCTGTTTACATGAACAACTCAGATAGCAATAGTGAGATGGAAAGTATAAATGGGGGGCCTATCATTCATGCTAGATGCTTATCAGAGAACTCAATATCCAGTGTTACCAAAACGGAACATGATTAA 3087 0.4399 MDMESARRSFERSREPGSKKPRLIDELDRGSNTRPFPQRQAGFRTNDRDSESSDSGRVVGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRLVDPSVHSSMRHLFGTWRGVFPPQTLQVIEMELGFTPAVNGSASASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVNDPTGAILNSNEDSERPDRALGAARPWLDPRVSMHNNQHTHQDEFNDSVPEKRIGGSYGGNEYSSGISSNLGSGVGRTGSRLIGGVAETISGQRNGFSLKHGFSNHEAPKSMNSDAHRPPTQTVTNIRSSVLSNNWKNSEEEEFIWDEMNSGLTDHGPNISSNLSTDPWMADDENLEGEDHLQITHPYGAKVERETSTVKKQLPAFGGHSSLSWQLQKQHPSDKLKLKPGHSEGFVPALSGLPRNTYSSDVRMRNRSFMPSATIGMAKIMGQQQFDSGGAESPSEQSPLRQQSPSLSVSVHPNSVQNFAEQDCRLTPKTSQFLGGLQNQCIRDPSPALLPNVQAGYLRKSQEKDTQGPLSSVPSLQPRLQQQQLGPSHIDATVKTKKPPHSKVSIARETSEKSATNSLSTASVKSGIISKKSITSGLPTTNSLDARNLPSQSGGRPTRSDGRSPTAIISSGSTASPSSSGPLNDYLSTLPKIPQGKTGQSQRDSTKPPASSKVSSASAPSSNVTNKNTINPIANLLSSLVAKGLISAEAESASTVPSEILMQSEDHTESITTSCSLPAAASVPGSAAVPVPSSRDEVDAAAKASLALSQSTSTEIKNLIGFDFKPDVIREMHPHVIRELLDDLPHHCRICGVRLKQQEQFNRHLEWHATREREQSGLITASRRWYAESNDWIAVKVEYPSEPEMSDSVDVYDNTTDTSQFDTMVVADENQCLCVLCGELFVDVYCQETDQWMFKGAVYMNNSDSNSEMESINGGPIIHARCLSENSISSVTKTEHD. 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05198 1028 SMART 558neu5 70 192 IPR006569 -
Seca1g05198 1028 CDD CID_Pcf11 72 191 IPR047415 -
Seca1g05198 1028 ProSiteProfiles CID domain profile. 67 195 IPR006569 -
Seca1g05198 1028 MobiDBLite consensus disorder prediction 228 253 - -
Seca1g05198 1028 MobiDBLite consensus disorder prediction 640 760 - -
Seca1g05198 1028 MobiDBLite consensus disorder prediction 1 29 - -
Seca1g05198 1028 MobiDBLite consensus disorder prediction 202 219 - -
Seca1g05198 1028 MobiDBLite consensus disorder prediction 516 543 - -
Seca1g05198 1028 ProSitePatterns Zinc finger C2H2 type domain signature. 879 899 IPR013087 -
Seca1g05198 1028 MobiDBLite consensus disorder prediction 202 261 - -
Seca1g05198 1028 MobiDBLite consensus disorder prediction 611 760 - -
Seca1g05198 1028 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 35 1019 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Seca1g05198 1028 SUPERFAMILY ENTH/VHS domain 67 190 IPR008942 -
Seca1g05198 1028 MobiDBLite consensus disorder prediction 1 68 - -
Seca1g05198 1028 Gene3D - 64 192 IPR008942 -
Seca1g05198 1028 FunFam polyadenylation and cleavage factor homolog 4 64 192 - -
Seca1g05198 1028 Pfam CID domain 76 185 IPR006569 -
Seca1g05198 1028 MobiDBLite consensus disorder prediction 625 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05198 Seca-Chr1 155142429 155151236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05198 60 395 C2H2 Transcription Factor Family AT4G04885 39.420 7.60e-57 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g05198 CID 6e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05198 K14400 - gmx:100788958 1280.77