Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05197 ATGGACATGGATAGTGCACGTAGATCTTTAGATAGATCGAGAGAAACAGGCTCCAAGAAGCCAAGATTGATTGACGAGCTGGACAGAGGGTTGAATATACCAGGCTCCAAGAAGCCCCGATTGATCGACGAGCTGGACAGAGGGTCGAATACACGACCATTTCCTCAGAGACAAGCTGGGTTTCGAACCAATGACAGAGACTCTGAAAGCAGCGATTCTGGTCGGGTTGTTGGGTACCAGCCACAGCCACCGCCTCACCAAGAGCTCGTGACTCAGTATAAGACCGCACTTGCTGAGCTCACTTTCAACTCAAAGCCAATAATTACCAACTTGACTATAATTGCTGGAGAGAACCTGTCTGCTGCCAAGGCGATTGCTGGGACAGTTTGTACTAACATTCTAGAGGTGCCAACTGAACAAAAGCTGCCATCACTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGAGGGATTATATAAAATACTTTGCTGCCAGGCTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATCCTTCTGTCAATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTATTTCCTCCTCAGACCCTTCAGGTAATTGAGAAGGAACTTGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCATCTTCTACACTCAGGAGTGATTCGCAGTCACAACGCCCGCCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCAGGACTAAAGGTGTAGTTAATGATACCGCTGGAGCTATTTTAAACTCAAACGAGGACTCAGAAAGGCCAGATAGAGCTTTGGGCGCTGCACGGCCGTGGCTGGATCCTAGGGTTAGCATGCATAATAATCAGCACACTCATAGAGATGCATTAAACGATTCTGTTCCTGAAAAGAGAATTGGTGGATCCTATGGAGGCAATGAATATAGTTCTGGTATTTCAAGTAATTTGGGCTCAGGAGTTGGAAGAACTGGAAGTAGGATCATTGGTGGTGTTGCTGAGACCATATCTGGGCAAACAAATGGTTTCAGTCTCAAACATAGTTTTTCTAATCATGAAGCACCAAAGTCCATGAATTCAGATGCACATCGTCAGCCAACACAAATAGTAACTAACATAAGGAGCAGTGGGATGTCAAATAACTGGAAAAATTCTGAGGAAGAGGAGTTCATGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCCAATGTTTCTAGCAATTTGAGCACAGACCCATGGATGGCTGATGATGAAAATATGGAAGGTGAAGATCACCTCCAAATCACACACCCTTTTGGGGCAAAGGTTGGTAGAGAAACATCCACTGTGAAGAAACAACTACCTGCATTTGGGGGCCATTCATCATTATCATGGCAATTGCAGAAGCAGCACTCAAGTGATAAGTTGAATCTGAAGCCGGGTCACTCAGAAGGATTTGGTTCCGCACTTAGTGGCTTACCCGGTAATACATATTCTTCAGATATCAGGATGAGGAATCGGTCTTTTATGCCAAATGCAACAATAGGAATGGCCAAAATTATGGGACAGCAGCAATTTGATTCTGGTGGAGCTGAATCCCCTTCTGGGCAGTCACCTTTGCGACAACAGTCTCCATCCCTGTCAGTATCCATACACCACCCTCATTCAGTGCAAAATTTGGCTGAGAAAGATTGTCGCTTGACACCTAAAACATCTCAATTTTTGGGAGGTCTGCAAAACCAATATATTAGAGATCCCTCACCTGCCCTTCTTCCCAATGTTCAGGTTGGTTACTTAAGAAAATCACAGGAAAAGGACACGCAGGGTCCATTATCTTCTGTACCTTCTTTTCAGCCAAGGCTTCAGCAACAGCAGCCTGGCCCTTCTCAGACTGATGCTACTGTTAAAACTAAGAAGCCACCACCCCAGTCTAAAGTTTCTTTGGCCAGAGAAACTTCAGAAAAGTCAACCACAAATAGTCTTTCAACTGCATCTGTGAAGAGTGGAGTCATCTCCAAAAAATCAATTACCAGTAGTCTTCCTACTTCAAGAATTCTGGATGCAAGGAATCTCCCATCTCAGTCAGGGGTTCGGCCTACTAGGTCAGATGGCCATTCCCCTACCACATTAATTTCTTTAGGGTCTACAGCATCACCATCTTCATCAGGTCCTCTGAATGATTATTCATCTACTCTGCCAAAAGTACTTAAAGGAAAGGTGGGACAATCACAAAGGGATTCTACTCATCCACCTGCATCCTCTAAAGTGAGCAGTGCCTCAGCTCCGAGCTCAAATGTCACCAATAAAAATACCTTAAATCCAATTGCAAACCTTTTAAGCTCATTAGTTGCAAAAGAAATAAAAAATCTCATTGGCTTTGATTTTAAACCTGATGTAATTCGAGAAATGCATCCACATGTAATCAGGGAATTATTGGATGAACTCCCTCATCATTGCAGAATTTGTGGTGTTAGGCTTAAACAGCAAGAACAATTCAATAGACACTCGGACTGGCATGCGGCAAGAGAAAGAGAACAAAATAGTCTAATTAGGGTGTCAAGAAGATGGTATGCAGAGTCAAATGATTGGATTGCTGGCAAAGCTGAATATCCATCAGAGCGTGAGACTTCTGATTCTGTAGATGTATATGACAAAACATCGGACACGAGTCAATCGGATACTATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGGGAGCTATTTGAAGATGTGTACTGTCAGGAAACGGACCAGTGGATGTTCAAAGGGGCTGTTTACATGAACAACTCAGATAGCAATAGTGAGGTGGAAAGTAGAAATGTGGGCCCCATCATTCATGCTAGATGCTTATTATCCAGTGTCACCAAAATGGTAAGGCTTATTATCTGA 2928 0.4372 MDMDSARRSLDRSRETGSKKPRLIDELDRGLNIPGSKKPRLIDELDRGSNTRPFPQRQAGFRTNDRDSESSDSGRVVGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCTNILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVNSSMRHLFGTWRGVFPPQTLQVIEKELGFTPAVNGSASASSTLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVNDTAGAILNSNEDSERPDRALGAARPWLDPRVSMHNNQHTHRDALNDSVPEKRIGGSYGGNEYSSGISSNLGSGVGRTGSRIIGGVAETISGQTNGFSLKHSFSNHEAPKSMNSDAHRQPTQIVTNIRSSGMSNNWKNSEEEEFMWDEMNSGLTDHGPNVSSNLSTDPWMADDENMEGEDHLQITHPFGAKVGRETSTVKKQLPAFGGHSSLSWQLQKQHSSDKLNLKPGHSEGFGSALSGLPGNTYSSDIRMRNRSFMPNATIGMAKIMGQQQFDSGGAESPSGQSPLRQQSPSLSVSIHHPHSVQNLAEKDCRLTPKTSQFLGGLQNQYIRDPSPALLPNVQVGYLRKSQEKDTQGPLSSVPSFQPRLQQQQPGPSQTDATVKTKKPPPQSKVSLARETSEKSTTNSLSTASVKSGVISKKSITSSLPTSRILDARNLPSQSGVRPTRSDGHSPTTLISLGSTASPSSSGPLNDYSSTLPKVLKGKVGQSQRDSTHPPASSKVSSASAPSSNVTNKNTLNPIANLLSSLVAKEIKNLIGFDFKPDVIREMHPHVIRELLDELPHHCRICGVRLKQQEQFNRHSDWHAAREREQNSLIRVSRRWYAESNDWIAGKAEYPSERETSDSVDVYDKTSDTSQSDTMVVADENQCLCVLCGELFEDVYCQETDQWMFKGAVYMNNSDSNSEVESRNVGPIIHARCLLSSVTKMVRLII. 976
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05197 975 FunFam polyadenylation and cleavage factor homolog 4 82 210 - -
Seca1g05197 975 MobiDBLite consensus disorder prediction 1 47 - -
Seca1g05197 975 MobiDBLite consensus disorder prediction 1 86 - -
Seca1g05197 975 Pfam CID domain 94 203 IPR006569 -
Seca1g05197 975 MobiDBLite consensus disorder prediction 611 738 - -
Seca1g05197 975 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 64 963 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Seca1g05197 975 MobiDBLite consensus disorder prediction 246 270 - -
Seca1g05197 975 ProSiteProfiles CID domain profile. 85 213 IPR006569 -
Seca1g05197 975 CDD CID_Pcf11 90 202 IPR047415 -
Seca1g05197 975 MobiDBLite consensus disorder prediction 611 780 - -
Seca1g05197 975 MobiDBLite consensus disorder prediction 216 279 - -
Seca1g05197 975 MobiDBLite consensus disorder prediction 216 237 - -
Seca1g05197 975 SMART 558neu5 88 210 IPR006569 -
Seca1g05197 975 SUPERFAMILY ENTH/VHS domain 85 210 IPR008942 -
Seca1g05197 975 Gene3D - 82 210 IPR008942 -
Seca1g05197 975 ProSitePatterns Zinc finger C2H2 type domain signature. 828 848 IPR013087 -
Seca1g05197 975 MobiDBLite consensus disorder prediction 535 560 - -
Seca1g05197 975 MobiDBLite consensus disorder prediction 750 780 - -
Seca1g05197 975 MobiDBLite consensus disorder prediction 477 505 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca1g05197 Seca-Chr1 155130275 155136680 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05197 755 962 C2H2 Transcription Factor Family AT4G04885 32.735 3.30e-33 136
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05197 K14400 - gmx:102662278 1102.04