Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g05197 | ATGGACATGGATAGTGCACGTAGATCTTTAGATAGATCGAGAGAAACAGGCTCCAAGAAGCCAAGATTGATTGACGAGCTGGACAGAGGGTTGAATATACCAGGCTCCAAGAAGCCCCGATTGATCGACGAGCTGGACAGAGGGTCGAATACACGACCATTTCCTCAGAGACAAGCTGGGTTTCGAACCAATGACAGAGACTCTGAAAGCAGCGATTCTGGTCGGGTTGTTGGGTACCAGCCACAGCCACCGCCTCACCAAGAGCTCGTGACTCAGTATAAGACCGCACTTGCTGAGCTCACTTTCAACTCAAAGCCAATAATTACCAACTTGACTATAATTGCTGGAGAGAACCTGTCTGCTGCCAAGGCGATTGCTGGGACAGTTTGTACTAACATTCTAGAGGTGCCAACTGAACAAAAGCTGCCATCACTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGAGGGATTATATAAAATACTTTGCTGCCAGGCTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATCCTTCTGTCAATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTATTTCCTCCTCAGACCCTTCAGGTAATTGAGAAGGAACTTGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCATCTTCTACACTCAGGAGTGATTCGCAGTCACAACGCCCGCCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCAGGACTAAAGGTGTAGTTAATGATACCGCTGGAGCTATTTTAAACTCAAACGAGGACTCAGAAAGGCCAGATAGAGCTTTGGGCGCTGCACGGCCGTGGCTGGATCCTAGGGTTAGCATGCATAATAATCAGCACACTCATAGAGATGCATTAAACGATTCTGTTCCTGAAAAGAGAATTGGTGGATCCTATGGAGGCAATGAATATAGTTCTGGTATTTCAAGTAATTTGGGCTCAGGAGTTGGAAGAACTGGAAGTAGGATCATTGGTGGTGTTGCTGAGACCATATCTGGGCAAACAAATGGTTTCAGTCTCAAACATAGTTTTTCTAATCATGAAGCACCAAAGTCCATGAATTCAGATGCACATCGTCAGCCAACACAAATAGTAACTAACATAAGGAGCAGTGGGATGTCAAATAACTGGAAAAATTCTGAGGAAGAGGAGTTCATGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCCAATGTTTCTAGCAATTTGAGCACAGACCCATGGATGGCTGATGATGAAAATATGGAAGGTGAAGATCACCTCCAAATCACACACCCTTTTGGGGCAAAGGTTGGTAGAGAAACATCCACTGTGAAGAAACAACTACCTGCATTTGGGGGCCATTCATCATTATCATGGCAATTGCAGAAGCAGCACTCAAGTGATAAGTTGAATCTGAAGCCGGGTCACTCAGAAGGATTTGGTTCCGCACTTAGTGGCTTACCCGGTAATACATATTCTTCAGATATCAGGATGAGGAATCGGTCTTTTATGCCAAATGCAACAATAGGAATGGCCAAAATTATGGGACAGCAGCAATTTGATTCTGGTGGAGCTGAATCCCCTTCTGGGCAGTCACCTTTGCGACAACAGTCTCCATCCCTGTCAGTATCCATACACCACCCTCATTCAGTGCAAAATTTGGCTGAGAAAGATTGTCGCTTGACACCTAAAACATCTCAATTTTTGGGAGGTCTGCAAAACCAATATATTAGAGATCCCTCACCTGCCCTTCTTCCCAATGTTCAGGTTGGTTACTTAAGAAAATCACAGGAAAAGGACACGCAGGGTCCATTATCTTCTGTACCTTCTTTTCAGCCAAGGCTTCAGCAACAGCAGCCTGGCCCTTCTCAGACTGATGCTACTGTTAAAACTAAGAAGCCACCACCCCAGTCTAAAGTTTCTTTGGCCAGAGAAACTTCAGAAAAGTCAACCACAAATAGTCTTTCAACTGCATCTGTGAAGAGTGGAGTCATCTCCAAAAAATCAATTACCAGTAGTCTTCCTACTTCAAGAATTCTGGATGCAAGGAATCTCCCATCTCAGTCAGGGGTTCGGCCTACTAGGTCAGATGGCCATTCCCCTACCACATTAATTTCTTTAGGGTCTACAGCATCACCATCTTCATCAGGTCCTCTGAATGATTATTCATCTACTCTGCCAAAAGTACTTAAAGGAAAGGTGGGACAATCACAAAGGGATTCTACTCATCCACCTGCATCCTCTAAAGTGAGCAGTGCCTCAGCTCCGAGCTCAAATGTCACCAATAAAAATACCTTAAATCCAATTGCAAACCTTTTAAGCTCATTAGTTGCAAAAGAAATAAAAAATCTCATTGGCTTTGATTTTAAACCTGATGTAATTCGAGAAATGCATCCACATGTAATCAGGGAATTATTGGATGAACTCCCTCATCATTGCAGAATTTGTGGTGTTAGGCTTAAACAGCAAGAACAATTCAATAGACACTCGGACTGGCATGCGGCAAGAGAAAGAGAACAAAATAGTCTAATTAGGGTGTCAAGAAGATGGTATGCAGAGTCAAATGATTGGATTGCTGGCAAAGCTGAATATCCATCAGAGCGTGAGACTTCTGATTCTGTAGATGTATATGACAAAACATCGGACACGAGTCAATCGGATACTATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGGGAGCTATTTGAAGATGTGTACTGTCAGGAAACGGACCAGTGGATGTTCAAAGGGGCTGTTTACATGAACAACTCAGATAGCAATAGTGAGGTGGAAAGTAGAAATGTGGGCCCCATCATTCATGCTAGATGCTTATTATCCAGTGTCACCAAAATGGTAAGGCTTATTATCTGA | 2928 | 0.4372 | MDMDSARRSLDRSRETGSKKPRLIDELDRGLNIPGSKKPRLIDELDRGSNTRPFPQRQAGFRTNDRDSESSDSGRVVGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCTNILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVNSSMRHLFGTWRGVFPPQTLQVIEKELGFTPAVNGSASASSTLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVNDTAGAILNSNEDSERPDRALGAARPWLDPRVSMHNNQHTHRDALNDSVPEKRIGGSYGGNEYSSGISSNLGSGVGRTGSRIIGGVAETISGQTNGFSLKHSFSNHEAPKSMNSDAHRQPTQIVTNIRSSGMSNNWKNSEEEEFMWDEMNSGLTDHGPNVSSNLSTDPWMADDENMEGEDHLQITHPFGAKVGRETSTVKKQLPAFGGHSSLSWQLQKQHSSDKLNLKPGHSEGFGSALSGLPGNTYSSDIRMRNRSFMPNATIGMAKIMGQQQFDSGGAESPSGQSPLRQQSPSLSVSIHHPHSVQNLAEKDCRLTPKTSQFLGGLQNQYIRDPSPALLPNVQVGYLRKSQEKDTQGPLSSVPSFQPRLQQQQPGPSQTDATVKTKKPPPQSKVSLARETSEKSTTNSLSTASVKSGVISKKSITSSLPTSRILDARNLPSQSGVRPTRSDGHSPTTLISLGSTASPSSSGPLNDYSSTLPKVLKGKVGQSQRDSTHPPASSKVSSASAPSSNVTNKNTLNPIANLLSSLVAKEIKNLIGFDFKPDVIREMHPHVIRELLDELPHHCRICGVRLKQQEQFNRHSDWHAAREREQNSLIRVSRRWYAESNDWIAGKAEYPSERETSDSVDVYDKTSDTSQSDTMVVADENQCLCVLCGELFEDVYCQETDQWMFKGAVYMNNSDSNSEVESRNVGPIIHARCLLSSVTKMVRLII. | 976 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g05197 | 975 | FunFam | polyadenylation and cleavage factor homolog 4 | 82 | 210 | - | - | |
Seca1g05197 | 975 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Seca1g05197 | 975 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
Seca1g05197 | 975 | Pfam | CID domain | 94 | 203 | IPR006569 | - | |
Seca1g05197 | 975 | MobiDBLite | consensus disorder prediction | 611 | 738 | - | - | |
Seca1g05197 | 975 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 64 | 963 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
Seca1g05197 | 975 | MobiDBLite | consensus disorder prediction | 246 | 270 | - | - | |
Seca1g05197 | 975 | ProSiteProfiles | CID domain profile. | 85 | 213 | IPR006569 | - | |
Seca1g05197 | 975 | CDD | CID_Pcf11 | 90 | 202 | IPR047415 | - | |
Seca1g05197 | 975 | MobiDBLite | consensus disorder prediction | 611 | 780 | - | - | |
Seca1g05197 | 975 | MobiDBLite | consensus disorder prediction | 216 | 279 | - | - | |
Seca1g05197 | 975 | MobiDBLite | consensus disorder prediction | 216 | 237 | - | - | |
Seca1g05197 | 975 | SMART | 558neu5 | 88 | 210 | IPR006569 | - | |
Seca1g05197 | 975 | SUPERFAMILY | ENTH/VHS domain | 85 | 210 | IPR008942 | - | |
Seca1g05197 | 975 | Gene3D | - | 82 | 210 | IPR008942 | - | |
Seca1g05197 | 975 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 828 | 848 | IPR013087 | - | |
Seca1g05197 | 975 | MobiDBLite | consensus disorder prediction | 535 | 560 | - | - | |
Seca1g05197 | 975 | MobiDBLite | consensus disorder prediction | 750 | 780 | - | - | |
Seca1g05197 | 975 | MobiDBLite | consensus disorder prediction | 477 | 505 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g05197 | Seca-Chr1 | 155130275 | 155136680 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g05197 | 755 | 962 | C2H2 Transcription Factor Family | AT4G04885 | 32.735 | 3.30e-33 | 136 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g05197 | K14400 | - | gmx:102662278 | 1102.04 |