Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05196 ATGAACCCAAAACAACATAATGATCCTAATTTGATTCCAGACTTGAAGGGTAAAGCGCCAGAGTTCATTCCGTTGTGTTCTCATCAAGCGTTTTCATCAAGTGTTGAATTTGAGAATAAGGAATTGCCACAGCCACTTGAATGTTTGCAAGGGAACCCAGTTCCACCATTTCTATCCAAGACTTTCGATCTGGTGGACGATCCGTCTCTGGATTCCATTATATCATGGGGCTCAACCGGTGTGAGTTTCGTGGTGTGGGATCCTACCCTGTTTGCAAAACACGTCTTGCCAAGGAATTTCAAGCATAACAATTTCTCAAGTTTTGTTCGCCAGTTAAATACTTATGGATTCCGCAAGATTGATACTGATACATGGGAGTTTTATAATGAAGCTTTCCAGCAAGGAAAGAGACATCTTCTGAAGAACATTCAAAGGCGCAGGTCATCTCAATCCCTGCAGGTTGGTTGCTATATTAGGCCTTCTACTGATGCAGGGAAGTCAGGACTTGAGGTTGAGATAGAAAGACTGAGGAAAGAAAGGAGTATGTTGATGCAAGAGGTGGTTGAATTGCAGCAACAGCAGAGAACAACAGTTCAACGTGCAAGACAAGTGAATCTTAGGCTCCAATCTGCAGAGCAGATACAGAAACAAATGGTTTCTTTCTTGGCAAAATTATTTGAAAATCCAACCTTTTTAACTTGCCTCAAGCATGAGAAGGAACAAAGAGATATGAATTCTCCTAGTCCTAGAGTGAGAAGGAAGTTTGTGAATCAGCACCAATGCCAAACAGGAATATCAGATTCTTTGAAGGAAGGGCAGATTGTGAAATACCATTACCAACCTGATTGGAGGAACATAACCATCTCTTCTGAAATACCAGAATTAAATTCAGTTTCAATTGAACAGTCTCCTCACCATTACCTTTCACAGGGTTTGGCAAGAGAATTGAGTGAAGGTGCAGAGAAACCAACTCTGCAGTTTGAAAATGTTGTATTATCAGATGATGAATTGGCTGTAATGCATGAGGTTATGCCAACTGCTGACATAATGGGAGAAGGGTTATCAAGCTTTAGACTTGAAGATCCCCTTTTCAAAGGGAAAAATGTAATGAGTGCTAATGAAGAAGTTCTTGCAGGTAATTTTGTTTCTTGCCTAGAGGATTTGACCAAGGAGACAGGATTTCAAGAGTTTTCACCTCTTGGAATTGAAAGCATCATCAAGCAAGAAGACATATGGAATGCCAACTTCAATGTTAGTGGTGCTCCTTCAAGCTCTGTGAATGAGCCGTGGGGAAATCCTATCAACTAA 1308 0.4083 MNPKQHNDPNLIPDLKGKAPEFIPLCSHQAFSSSVEFENKELPQPLECLQGNPVPPFLSKTFDLVDDPSLDSIISWGSTGVSFVVWDPTLFAKHVLPRNFKHNNFSSFVRQLNTYGFRKIDTDTWEFYNEAFQQGKRHLLKNIQRRRSSQSLQVGCYIRPSTDAGKSGLEVEIERLRKERSMLMQEVVELQQQQRTTVQRARQVNLRLQSAEQIQKQMVSFLAKLFENPTFLTCLKHEKEQRDMNSPSPRVRRKFVNQHQCQTGISDSLKEGQIVKYHYQPDWRNITISSEIPELNSVSIEQSPHHYLSQGLARELSEGAEKPTLQFENVVLSDDELAVMHEVMPTADIMGEGLSSFRLEDPLFKGKNVMSANEEVLAGNFVSCLEDLTKETGFQEFSPLGIESIIKQEDIWNANFNVSGAPSSSVNEPWGNPIN. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05196 435 PRINTS Heat shock factor (HSF) domain signature 57 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g05196 435 PRINTS Heat shock factor (HSF) domain signature 108 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g05196 435 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g05196 435 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 43 255 IPR027725 -
Seca1g05196 435 Gene3D - 50 147 IPR036388 -
Seca1g05196 435 SUPERFAMILY "Winged helix" DNA-binding domain 52 146 IPR036390 -
Seca1g05196 435 Coils Coil 166 193 - -
Seca1g05196 435 SMART hsfneu3 53 146 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g05196 435 FunFam Heat stress transcription factor B-4 49 147 - -
Seca1g05196 435 ProSitePatterns HSF-type DNA-binding domain signature. 96 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g05196 435 Pfam HSF-type DNA-binding 57 146 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05196 Seca-Chr1 155123512 155126077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05196 33 291 HSF AT5G03720 56.923 2.22e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca1g05196 HSF_DNA-bind 1.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05196 K09419 - gmx:100788429 504.982