Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05194 ATGGCATGCCTGGGGGAGGTCAGTAAGGATAAAGGGGGTGAATCAGTAACCCTGCATGTGAAATTTGGTGACCAGAAGCTTGTACTTGGAACACTTTCTTCTGAGAAGTTTCCGCAGATATCTTATGATTTGATATTTGAGAAGGAATTTGAGCTATCCCATAACTGGAAAAATGGGAGTGTCTTCTTTACTGGATTTAAAGCCGAATCCCAGTTGGTGTCTGATGATGATGAAGATTCTGATGATTTTGATGATGAAGATATTCCAGTCAGTGCTGTCAATGGGAAACCTGAGTTTGAGGTGAAGAACAGTATCAAACCTGATACAATTGAAGCTAAACGAAAGGAGAAGATAGCAGACCCAACAAAGAAGGCGAAGGTTAATGAAAAGGATGCAAATGGTGAAGATGAAGAAGATTCATCTGAATCAGAGTCTGATGAGGATTCTAGTGAAGATGAGCCCATGCCAAATGGTGGGATAGAAAGTAGTGAAGGCGACGATGACGACGACGACGATGATGATGAAGAGGAGACACCTAAGAAGACTGAGGGGAGAAATAAGAGGGTAGTTGAATCTCCCAAGAAAACACCCGTTCCTGCGAAGAAGGCAAAATTTGTTACTCCTCAGAAGGCTGGTACTGATGGCAAGAATGGTGGCCATGTTGCAACTCCTTACCCTTCTAAGCAGGCTGGTAAGGCGGCTGCAAATAGCAAGCTGCTGGGTAAGCAGCAGACTCCAAAGTCTGGTGGAGATTACAGCTGCAAATCTTGCAACAGGTCATTTAAGACAGAAGATGCCATAAATTCTCATAATAGGGCCAAACACAGTGCTAAGTGA 837 0.4361 MACLGEVSKDKGGESVTLHVKFGDQKLVLGTLSSEKFPQISYDLIFEKEFELSHNWKNGSVFFTGFKAESQLVSDDDEDSDDFDDEDIPVSAVNGKPEFEVKNSIKPDTIEAKRKEKIADPTKKAKVNEKDANGEDEEDSSESESDEDSSEDEPMPNGGIESSEGDDDDDDDDDEEETPKKTEGRNKRVVESPKKTPVPAKKAKFVTPQKAGTDGKNGGHVATPYPSKQAGKAAANSKLLGKQQTPKSGGDYSCKSCNRSFKTEDAINSHNRAKHSAK. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05194 278 MobiDBLite consensus disorder prediction 101 133 - -
Seca1g05194 278 MobiDBLite consensus disorder prediction 178 198 - -
Seca1g05194 278 MobiDBLite consensus disorder prediction 238 253 - -
Seca1g05194 278 MobiDBLite consensus disorder prediction 134 154 - -
Seca1g05194 278 ProSitePatterns Zinc finger C2H2 type domain signature. 254 275 IPR013087 -
Seca1g05194 278 MobiDBLite consensus disorder prediction 73 253 - -
Seca1g05194 278 MobiDBLite consensus disorder prediction 162 177 - -
Seca1g05194 278 Gene3D Nucleoplasmin core domain 1 72 - -
Seca1g05194 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 278 IPR013087 -
Seca1g05194 278 MobiDBLite consensus disorder prediction 74 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05194 Seca-Chr1 154979764 154984242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05194 2 277 C2H2 Transcription Factor Family AT5G03740 33.216 2.72e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g05194 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05194 - - ccaj:109796568 352.443