Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05193 ATGATCCATCTAGGTCGACCCATCATTGCTGACTTCTCTCCTGTTACGGATTTTCGAGAAGCTACTTGTAGGCAGTATGAGGAAAATGTATGCAACCGAGGGGGCTACTGTAACTTCATGCACCTAAAGAAGATTAGCAGGGATTTGAGAAGGCGATTGTTTGGAAGAAATAGACGATGGAATGGTCGTGGTGGAAGCCGGAGCCGGAGCCCTCCAAGGAACCGAAACTATGAGGAGCGCCCACATTCTGGTCGTAATTCTGGTAGAAGAGATTTTGACAGGCCTCATGGCCATCATGGTGGTAGGAGGCCTAGAAGCCGTAGTCCTCGGCAGCACAGAGGAAAACGAAGTAGAAGTCCTGTGGGAAGGGATAGGAGTCCTGTCAGAGAAAGTAGTGCAGAAAGGAGAGCTAAAATAGAGCAGTGGAACAGGGAGAAGGAACAAGGTGATTCTGGCAACAAGAACAATTCGAATAGCAATGATTATGAAGAACCAAATGTTGCACAAAATGGTAGTGAATCTGGTAACCATCAGATATAG 540 0.4685 MIHLGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRRRLFGRNRRWNGRGGSRSRSPPRNRNYEERPHSGRNSGRRDFDRPHGHHGGRRPRSRSPRQHRGKRSRSPVGRDRSPVRESSAERRAKIEQWNREKEQGDSGNKNNSNSNDYEEPNVAQNGSESGNHQI. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05193 179 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 19 42 IPR000571 GO:0046872
Seca1g05193 179 MobiDBLite consensus disorder prediction 120 151 - -
Seca1g05193 179 MobiDBLite consensus disorder prediction 99 119 - -
Seca1g05193 179 ProSiteProfiles Zinc finger C3H1-type profile. 17 44 IPR000571 GO:0046872
Seca1g05193 179 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 5 144 IPR009145 GO:0000398|GO:0003723|GO:0089701
Seca1g05193 179 MobiDBLite consensus disorder prediction 152 179 - -
Seca1g05193 179 MobiDBLite consensus disorder prediction 72 98 - -
Seca1g05193 179 MobiDBLite consensus disorder prediction 58 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05193 Seca-Chr1 154978219 154979460 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca1g05193 zf-CCCH 0.00015 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05193 K12836 - gmx:100783847 219.164