Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05181 ATGGTTTGGCTTTCAGATTATCCTCTACTGATTCTCCTACTCTTATCTTTCCCTCTGTTTCTCTTCCTCTCCAGCCACCGCCGTAAAATCTCCGCCACCAACCGCCGCCGCCTTCCACCGGGACCGGCGGGATGGCCTGTATTCGGGAACATGTTCCAGCTTGGAGAAATGCCTCACCGCACCCTCACTAACCTAAGGGAGAAGTACGGTCCCGTCGTGTGGCTCCAAATAGGCGCCATAAACACCATGGCAATACTCTCTGCACAAACCGCAACCGTTTTCTTCAAGAACCACGACCATGCCTTCTCCGACCGAACCATAACCGAAACCATGCGCGTCCATAACTACGATAAATCCTCCTTGGCCTTGGCTCCTTACGGCTCCTACTGGCGCCTCATGCGAAGACTCGTAACCGTCGACATGCTCGTCGCGAAACGCATCAACGACACCGCCTCTGTTCGCAGAAGATGCGTAAACGACATGCTCGAATGGGTCGCCAAAGAAGCGCGCAAGTTAGAGAAGGGACGCGGGCTCCACGTGGCGCGTTTCATTTTCCTCATGACTTTTAATCTGTTTGGGAACTTGATGCTGTCACGTGACTTGTTCGACCCGGATTCAGAAGTCGGGTCGGAGTTTTTCGAGGCGATGATGGGCCTGATGGAATGGACGGGCCACGTTAACGTTACGGACCTGTTCCCGTGGTTGAGGTGGTTGGACCCGCAGGGACTCAGGAGAAAAATGGATAGGGACATGGGGAAAGCTATTCGAATCGCTTCTAGGTTCGTGAAAGAGCGTTTGGAGGAACAGCGTGAGAACAAGTCAAGGGACTTCTTAGATGTGTTGCTTGAGTTTCAAAAGAGTGAGAGCCAAGAGGCACTCAATATCTCAGATAAAGACCTCAACATTTTCATATTGGAAATATTTTTGGCGGGCTCAGAAACAACGAGCAGCACGATTGAATGGGCTTTGACGGAGTTATTGTGTAACCGTGAGTGTATGTTGAAGGTGAAAAATGAGCTTAGTTCGGTGGTTGGGCCCAGGGAAGTTGAGGAGAGTGATATAGAGAACCTTCCCTACCTACAAGGTGTGGTTAAGGAAACACTTCGGTTGCATCCTCCGATTCCACTGCTTGTTCCACGAAAGGCCGTGCAGGACACGGAGTTTATGGGTTACTTTATACCCAAAGACACGCAGGTTTTTGTGAATGCGTGGGCAATTGGAAGAGACCCGGATGTGTGGGATGAGCCTTTGGGCTTCAAGCCCGAGAGGTTTTTGGGTTCCAAGACTGATTATAAGGGGCACCACTATGAGCTGATCCCGTTTGGCGCTGGTAGAAGGATGTGTGCTGGCGTGCCCTTGGCCCATAGAGTGCTTCACCTGGTGTTGGGATCGTTGCTTCACCGGTTTGATTGGGAGCTTGATAGCAATGTTACGCCTTCAACCATGGACATGAAGGACAAGCTGGGCATAACCATGAGAAAGCTTGAGCCCTTGCTTGCGGTGCCAAAATTAATCGGTTCTTGA 1524 0.5105 MVWLSDYPLLILLLLSFPLFLFLSSHRRKISATNRRRLPPGPAGWPVFGNMFQLGEMPHRTLTNLREKYGPVVWLQIGAINTMAILSAQTATVFFKNHDHAFSDRTITETMRVHNYDKSSLALAPYGSYWRLMRRLVTVDMLVAKRINDTASVRRRCVNDMLEWVAKEARKLEKGRGLHVARFIFLMTFNLFGNLMLSRDLFDPDSEVGSEFFEAMMGLMEWTGHVNVTDLFPWLRWLDPQGLRRKMDRDMGKAIRIASRFVKERLEEQRENKSRDFLDVLLEFQKSESQEALNISDKDLNIFILEIFLAGSETTSSTIEWALTELLCNRECMLKVKNELSSVVGPREVEESDIENLPYLQGVVKETLRLHPPIPLLVPRKAVQDTEFMGYFIPKDTQVFVNAWAIGRDPDVWDEPLGFKPERFLGSKTDYKGHHYELIPFGAGRRMCAGVPLAHRVLHLVLGSLLHRFDWELDSNVTPSTMDMKDKLGITMRKLEPLLAVPKLIGS. 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05181 507 CDD CYP76-like 66 502 - -
Seca1g05181 507 Gene3D Cytochrome P450 24 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05181 507 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05181 507 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05181 507 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05181 507 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05181 507 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05181 507 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05181 507 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05181 507 FunFam Cytochrome P450 76C4 30 501 - -
Seca1g05181 507 SUPERFAMILY Cytochrome P450 39 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05181 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Seca1g05181 507 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 13 503 - -
Seca1g05181 507 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05181 507 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05181 507 PRINTS P450 superfamily signature 448 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05181 507 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g05181 507 Pfam Cytochrome P450 39 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05181 Seca-Chr1 154836504 154838796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05181 35 502 Cytochrome P450 AT3G52970 45.935 2.14e-146 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05181 K22983 - gmx:100785241 851.277