Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05180 ATGGCATTGGTTTTGGTTTTGACCTTGTTGTTGGCATTCCTCTGCGTGGCACAGAGTGCACCCCAGAATGATACACACGCCCTCACCCAATTCCGCCTCCAAACCGACACTCACGGTTACCTCCTCGGTAACTGGACAACCGGCGACGCTTGCACCGCCGCATGGCGCGGCGTTGAATGCTCCCCAAACGGCAGAGTAGTGGGTCTCTCCATTCCTTCCCTCAATCTCCGAGGCCCAATTGATTCTCTTTCACCACTCTCCTACTTGCGGTTCCTCGATCTCCACGATAACCGTTTAAACGGCACCATTACCCCTCTCTCCAACTGCACCAGCCTGGAACTCCTCTACCTCGCCGGCAACGACTTCTCCGGCGAGATACCGCCGGAGATTGCTTCCCTGAGACTCCTCCTCAGGCTTGACCTCTCCGATAACAACATCCGCGGCCCAATCCCTAACGAACTCTTGAAGCTAACTCATCTTCTCACACTTCGTCTTCAGAACAATGCATTCTCTGGCCAAGTCCCTGATCTTTCTTCTTCCCTTCTCAACCTCAGCGAACTCAACATCACCAACAACGAACTCCATGGACACTTACCCGACGCCATGTTCAAGAAATTCGGCAATGCAAGCTTCTCCGGCAACGACGGTCTTTGTGGGCCAACTCCATTGCCGGTTTGTTCCATTACAGAGTCCCCTTCCACTTCCTCTTCTTCTTCTTCGACTGTTCCTTCAAACCCAAGCTCGTTGCCACAAACAAGTGGCATAATTGCAACTCCTCCAAAACAGAAAAAGGGGTTGAATCCTGGAACCATTGTGGCGATTGTGGTGGCGGTTTCTGTGGCTTTAGTGGTGGCGATATCTTTTGCGGTGGCTCATTGTTGTGCCAGGGGAGGAAGCTCGAACTCGACGGTGGGGAGTGAGAGTGGGAAGAGGAAGAGTGAGAGTAGCTATGGAAGCGAGAAGAAGGGGTATTGTGCAACTGGTGGTGTGGATAGAGATAGTGATGGGACGTGTACTGAGACAGAACGAAGCAAGCTTGTGTTTTTTGATAGGAAGAGTCAGTTTGAGTTGGAAGATCTTCTTCGTGCATCTGCAGAGATGCTTGGGAAAGGTAGCTTAGGGACGGTTTATAGAGCAGTGCTTGATGATGGATGCACTGTGGCTGTGAAGAGACTTAAGGATGCAAATCCATGTGAAAGGAACCAGTTTGAACAGTATATGGATGTTGTAGGAAAGCTCAAGCACCCCAACATTGTTAGACTCAGAGCTTATTACTATGCTAAGGAAGAAAAACTTCTTGTCTATGATTATCTCCCAAATGGAAGCTTACATGCTCTTCTTCATGGGAACCGTGGTCCAGGAAGGATTCCATTAGATTGGACCACAAGAATAAGTTTGGTATTGGGGGCAGCAAGAGGGCTAGCTAGGATTCATGCAGAGTATAATGCAGCCAAGATACCTCACGGGAATGTTAAATCTTCCAATGTGCTTCTTGACAAGAATGGGGTTGCTTGCATCTCTGACTTTGGGTTGTCACTACTGTTGAACCCTGTTCATGCCATTGCGAGATTGGGTGGGTACAGAGCTCCTGAACAAGCAGAGGTGAAGAAGCTGTCTCAGGAAGCTGACGTGTACAGTTTTGGTGTATTGTTGTTGGAGGTTCTCACAGGGAGAGCTCCTTCTCTGTATCCTTCTCCAGCTCGTCCTAGAGTGGAGTTAGAGGAACAAGAAGTGGATCTTCCCAAATGGGTAAGGTCGGTTGTGAAGGAAGAGTGGACTTCAGAGGTGTTTGATCAGGAACTGTTGAGGTACAAGAATATTGAGGAAGAGCTTGTGTCCATGCTGAATGTGGGGTTGGCTTGTGTGGTGCCACAACCTGAGAAAAGGCCAAACATGTTGGAAGTTGTGAAGATGATTGAAGATATAAGGGTGGAACAATCTCCTCTTAGAGGAGAGGATTATGATGAATCACGCAATTCACTCTCACCCTCACTTGCCACCACTGAAGATGGATTGGCTTAA 2022 0.4886 MALVLVLTLLLAFLCVAQSAPQNDTHALTQFRLQTDTHGYLLGNWTTGDACTAAWRGVECSPNGRVVGLSIPSLNLRGPIDSLSPLSYLRFLDLHDNRLNGTITPLSNCTSLELLYLAGNDFSGEIPPEIASLRLLLRLDLSDNNIRGPIPNELLKLTHLLTLRLQNNAFSGQVPDLSSSLLNLSELNITNNELHGHLPDAMFKKFGNASFSGNDGLCGPTPLPVCSITESPSTSSSSSSTVPSNPSSLPQTSGIIATPPKQKKGLNPGTIVAIVVAVSVALVVAISFAVAHCCARGGSSNSTVGSESGKRKSESSYGSEKKGYCATGGVDRDSDGTCTETERSKLVFFDRKSQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCERNQFEQYMDVVGKLKHPNIVRLRAYYYAKEEKLLVYDYLPNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLARIHAEYNAAKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQAEVKKLSQEADVYSFGVLLLEVLTGRAPSLYPSPARPRVELEEQEVDLPKWVRSVVKEEWTSEVFDQELLRYKNIEEELVSMLNVGLACVVPQPEKRPNMLEVVKMIEDIRVEQSPLRGEDYDESRNSLSPSLATTEDGLA. 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05180 673 SUPERFAMILY Protein kinase-like (PK-like) 366 639 IPR011009 -
Seca1g05180 673 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 438 652 - -
Seca1g05180 673 Gene3D Ribonuclease Inhibitor 17 82 IPR032675 -
Seca1g05180 673 Gene3D Ribonuclease Inhibitor 83 234 IPR032675 -
Seca1g05180 673 ProSiteProfiles Protein kinase domain profile. 362 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05180 673 Gene3D Transferase(Phosphotransferase) domain 1 438 662 - -
Seca1g05180 673 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Seca1g05180 673 MobiDBLite consensus disorder prediction 229 258 - -
Seca1g05180 673 MobiDBLite consensus disorder prediction 648 673 - -
Seca1g05180 673 FunFam pollen receptor-like kinase 1 332 437 - -
Seca1g05180 673 CDD STKc_IRAK 368 642 - -
Seca1g05180 673 MobiDBLite consensus disorder prediction 297 322 - -
Seca1g05180 673 MobiDBLite consensus disorder prediction 297 312 - -
Seca1g05180 673 MobiDBLite consensus disorder prediction 229 262 - -
Seca1g05180 673 SUPERFAMILY L domain-like 22 204 - -
Seca1g05180 673 FunFam Nuclear pore complex protein NUP107 21 176 - -
Seca1g05180 673 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 644 IPR046959 -
Seca1g05180 673 Gene3D Phosphorylase Kinase; domain 1 332 437 - -
Seca1g05180 673 Pfam Protein kinase domain 366 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05180 Seca-Chr1 154823098 154826016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05180 22 669 Receptor kinase-like Gene Family AT2G36570 66.916 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca1g05180 Pkinase 1.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05180 - - gmx:100808402 986.867