Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05177 ATGGAACCCAATGGACTAGGTGGTGGAATATATCCTAGCATCACTAGTGGATTGCTAGGAGTAGAAAACCCTTTAAAACAACAACAAAACCTCCAAAATCAGCATAACCCTCTCCCTTTGCAAATGGTTTCCTATGCTACCCACCATGATAGTGCTGACACCCATATTTCACAACCTATCAAACATGGGTACCCTTATAATTCAGGCAAGACCAACAAGCCCCAAACACAAACCACCCTAAGTGATGAAGATGACCCTGGGTTCACAGCAGATGATAGCTCTGTAGACCCAAAGAGGAAAGTGTCACCATGGCATAGAATGAAGTGGACGGATGCTATGGTTAGGCTCTTAATAATGGCTGTTTATTACATTGGAGATGAAGCTGGTTCTGAAGGGACTGATCCAACTGGGAAGAAGAAAGCCACTGGTTTATTGCAAAAGAAAGGGAAATGGAAATCAGTGTCTAGGGGCATGATGGAAAAAGGGTACTATGTTTCCCCTCAGCAATGTGAGGACAAGTTCAATGATTTGAACAAGAGGTACAAGAGGGTCAATGATATTCTTGGCAAGGGAACAGCTTGTAAGGTTGTGGAAAACCAGAGTTTGTTGGACACAATGGATTTGTCTCCAAAGATGAAAGAAGAAGCTAGGAAATTGCTCAACTCTAAGCACCTTTTCTTCAGGGAGATGTGTGCTTACCATAATAGCTGTGGTCATGGGAGCACTTCCAATGTGCACCAATCCACTGAGGGTGGAACTGAGGCTCACCCACAACATCAACAGCAACAGCAAACACAGCCACAGCAGCAAAGATGCTCTCATTCATCAGAGAATGGTGTGGGGAGTCTAAGAATGTTGAAAGGGAGAAGTGGGGAAGAGGAAGAAGATGAGGATGAGGATGATGACTGGGATGACACTTCTGAGGAAGAGGAAGAGGAATCAGGAGAAGGTGGGTCAAAGGGTCAAGTAGAGGAGCTGGAAGAGAGTGATGTGATGAGGAAGAGACCAAGGAAAGGAGGGTTTTGTGTGTCATCACAGTCACAAGTGATGCAGCAATTGAGCAGTGAGGTGAGTGGTGTGTTGCAAGATGGAGGGAAGAGTCCATGGGAGAAAAAACAGTGGATGAAGAAGAGGGCTTTGCAGTTGGAGGAGCAACAAGTAGGTTATCAAGTGGAGGCCTTTGAGCTTGAAAAGCAGAGGTTGAAATGGACCAAGTATAGCAGCAAGAAGGAGAGGGAATTGGAGAGACACAAACTTGAAAATGAATGGAGGAGATTGGAAATTGAAAGAATGGTTCTGCTACTTCGCCAGAAGGAGCTTGACTTACTGAATATTCAGCAGCAACAACAGCAACATTCTTCTACCTAG 1368 0.4481 MEPNGLGGGIYPSITSGLLGVENPLKQQQNLQNQHNPLPLQMVSYATHHDSADTHISQPIKHGYPYNSGKTNKPQTQTTLSDEDDPGFTADDSSVDPKRKVSPWHRMKWTDAMVRLLIMAVYYIGDEAGSEGTDPTGKKKATGLLQKKGKWKSVSRGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVENQSLLDTMDLSPKMKEEARKLLNSKHLFFREMCAYHNSCGHGSTSNVHQSTEGGTEAHPQHQQQQQTQPQQQRCSHSSENGVGSLRMLKGRSGEEEEDEDEDDDWDDTSEEEEEESGEGGSKGQVEELEESDVMRKRPRKGGFCVSSQSQVMQQLSSEVSGVLQDGGKSPWEKKQWMKKRALQLEEQQVGYQVEAFELEKQRLKWTKYSSKKERELERHKLENEWRRLEIERMVLLLRQKELDLLNIQQQQQQHSST. 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05177 455 Gene3D - 109 183 - -
Seca1g05177 455 MobiDBLite consensus disorder prediction 239 346 - -
Seca1g05177 455 Coils Coil 409 429 - -
Seca1g05177 455 MobiDBLite consensus disorder prediction 50 99 - -
Seca1g05177 455 MobiDBLite consensus disorder prediction 292 315 - -
Seca1g05177 455 PANTHER F16F4.11 PROTEIN-RELATED 1 446 - -
Seca1g05177 455 MobiDBLite consensus disorder prediction 64 84 - -
Seca1g05177 455 MobiDBLite consensus disorder prediction 316 337 - -
Seca1g05177 455 Pfam Myb/SANT-like DNA-binding domain 106 232 IPR044822 -
Seca1g05177 455 MobiDBLite consensus disorder prediction 239 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05177 Seca-Chr1 154782786 154784153 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca1g05177 Myb_DNA-bind_4 3.6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05177 - - gmx:547619 591.652