Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05174 ATGGAGTTGAAGGGAAGAGACAGGAAAGTAGTGAAGCCAGACATGGATTGGAATCAAAACTCAAGACACTTGGTTCCTCGGGCAGAGTCTTCCTTAAGCTTCTTCTGCCACTATAACAACAACCCATATTCAGAAGGAATGGAAGTGAAACAACCAGCATTAGGAGAGACAGCACAAAGGTTGCTCCCACCAATGGAGAATGGAAGCCGGGAGAAGAAGAAGAGATTAACAAATAACCAGATTGAGTTACTTGAGAGGAGTTTCCATGAGGAGATAAAGTTGGACCCTGAAAGGAAGATGAAGCTTTCAAAGGAGCTAGGACTCCCACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTACAAGGTGGAAGGCCAAGCAACTTGAGCACTTGTACGATATGCTTAAACATGAATTTGATGCCATCTGCAAGGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAAGGCTAAGAGAGCAAGCATTCAGGACACAAACATTAGCTGGTTATACAGAAATCTCTGGGGAAGAAACAGTAGAAAGCACATCAGAGGCGGCGCGTGGTTGTGGTTCCAAGAAGTCACAAGGAACTAGTAACATTCAGCAGGCTACAGAGGCAGAGGGATACTGTTGTTTCACTGTGGAAGATTATAACTCAGTTTCAATGGCTCAGTACCATTGGCCTGTTGTGCCTTATAATAATTGTCCCTAA 723 0.4412 MELKGRDRKVVKPDMDWNQNSRHLVPRAESSLSFFCHYNNNPYSEGMEVKQPALGETAQRLLPPMENGSREKKKRLTNNQIELLERSFHEEIKLDPERKMKLSKELGLPPRQIAVWFQNRRTRWKAKQLEHLYDMLKHEFDAICKEKQKLQEEVMKLKARLREQAFRTQTLAGYTEISGEETVESTSEAARGCGSKKSQGTSNIQQATEAEGYCCFTVEDYNSVSMAQYHWPVVPYNNCP. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05174 240 Gene3D - 65 133 - -
Seca1g05174 240 CDD homeodomain 70 128 IPR001356 GO:0003677
Seca1g05174 240 SUPERFAMILY Homeodomain-like 63 129 IPR009057 -
Seca1g05174 240 SMART HOX_1 69 131 IPR001356 GO:0003677
Seca1g05174 240 Coils Coil 133 167 - -
Seca1g05174 240 Pfam Homeodomain 70 125 IPR001356 GO:0003677
Seca1g05174 240 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 64 202 IPR045224 GO:0003700
Seca1g05174 240 PRINTS Lambda-repressor HTH signature 107 123 IPR000047 GO:0003677
Seca1g05174 240 PRINTS Lambda-repressor HTH signature 98 107 IPR000047 GO:0003677
Seca1g05174 240 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Seca1g05174 240 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
Seca1g05174 240 FunFam Putative homeobox-leucine zipper protein ATHB-51 69 132 - -
Seca1g05174 240 Pfam Homeobox associated leucine zipper 127 161 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05174 Seca-Chr1 154711562 154713220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05174 67 165 Homeobox Transcription Factor Family AT2G36610 59.813 1.15e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca1g05174 Homeodomain 7.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05174 - - ccaj:109798071 292.352