Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05172 ATGGTTCTCAAGTACGTATTCGCCGCACCTCCATCTTCTTTGATTGTTACAATCTCATCTGTAATTTCTCCTAATAGTTCTTTGTTCTGTGATCCATTAGCTTATCCGAGCTCAATCAACATGCCTTATGTTTTTTGTTTCCCTGGAATTTTGTTGAATAATAATGAAGCAGGATTCGGTCTCGTCGTGTTACAATCAGTATCACAGAGTTTGATTGAAATTGAAGATCCTGCTTTTTTTTTCCAATTTGCTTGCTGGACGGAACTTTGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAGAGGCATCAGATTTATTCGTAGTGATTCTCAGGTGTTCCTGTTTGCCAACTCAAAATGCAAAAGGTATTTCCACAACCGTTTGAAGCCATCAAAGCTCACCTGGACTGCCATGTACAGGAAGCAACACAAGAAGGACATTGCTCAAGAAGCTGTGAAAAAGAGGCGCCGTGCTACCAAGAAGCCTTACTCTAGGTCCATTGTTGGTGCTACTTTGGAAGTTATCCAGAAAAAAAGAACTGAGAAGCCAGAGGTTCGGGACGCAGCTAGGGAAGCTGCTCTTCGTGAAATTAAAGAGAGGATCAAGAAAACAAAGGATGAGAAGAAGGCTAAGAAAGCAGAAGTAGCGGCTAAGTCACAAAAAGCTCAAGGCAAAGCCAATGTTGCAAAAGGTGCTATGCCCAAGGGTCCCAAAATGGGTGGTGGAGGCGGGAAACGCTGA 741 0.4345 MVLKYVFAAPPSSLIVTISSVISPNSSLFCDPLAYPSSINMPYVFCFPGILLNNNEAGFGLVVLQSVSQSLIEIEDPAFFFQFACWTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAAKSQKAQGKANVAKGAMPKGPKMGGGGGKR. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05172 246 MobiDBLite consensus disorder prediction 201 218 - -
Seca1g05172 246 CDD Ribosomal_L24e_L24 87 138 IPR000988 -
Seca1g05172 246 Gene3D - 151 220 - -
Seca1g05172 246 SMART 4TRASH 90 128 IPR011017 -
Seca1g05172 246 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 88 140 - -
Seca1g05172 246 MobiDBLite consensus disorder prediction 201 246 - -
Seca1g05172 246 Coils Coil 194 221 - -
Seca1g05172 246 FunFam 60S ribosomal protein L24 85 146 - -
Seca1g05172 246 PANTHER 60S RIBOSOMAL PROTEIN L24 87 238 IPR000988 -
Seca1g05172 246 ProSitePatterns Ribosomal protein L24e signature. 92 109 IPR023442 -
Seca1g05172 246 Pfam Ribosomal protein L24e 87 149 IPR000988 -
Seca1g05172 246 Gene3D Ribosomal protein L24e 86 146 IPR038630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05172 Seca-Chr1 154689058 154691002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05172 87 239 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 86.928 3.83e-83 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05172 K02896 - twl:119989140 234.958