Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05162 ATGATTGCTGAATCAAACATGAGACCAAGCTTCCATTTTAGCCTTGCCTTTCTTCTTTTCCTTTTCCTTGGTCATTTTACTTCTTCACAAAAAACATGTCCAAACTGTGGCTCTATGCAAGTTCCATACCCTTTGAGCACAGAACCAAATTGTGGTGATCCAACCTATAGGCTTCGTTGTGATCCTCACTCTCAAAAGCTTTACTTTGACACCCTCAATAGTAGTTCCTATCTTGTACTTAGAATCATGTCTTCAATACAACGTTTGGTGGTAGAACCATCACCTTGGCTACCTGGTTCATGTGTTACACAAGACATGCCAGTTAGCAATGGTATTTGGTTAAACCAATCACTCCCTTTCAACATAACTTCATCCAACACAGTGTTCCTCTTCAACTGTTCCCCTCGCCTCTTGGTTTCTCCTCTTAACTGCACTTCTTCAAGTATTTGCCATCATTACTTGGAGAGTTCAGGTCATGTTGACACAAAAAGAGCACTTGAGTGTGCAAGTGATCTTCACCCTTGTTGCACCTTTGTTGCTGGTGGGGTACCTTCAGCTTACAAGATTAGGCTTCACAATTCTGGTTGCAAAGCATTCAGAAGCATCCTTCATTTGGATCAACAGAAACCTGCTAATCAGTGGGAGGAAGGCCTTGAAATTCAATGGACTCCTCCACCTGAACCTGTCTGCAGGACACAAAGGGATTGCTCTGGAGACTCAAAGTGTTCCCCTGCTGGTAAAGATGGTCTCTTTCGTTGTCTTTGCAATAGGGGACATCATTGGGACCCTTTTATAGCAACCTGTGTGAAGTATAAGAGAAAATCCAAATGGAAAACCAGCTTGGAGGTCTCAATAGGGGTTATTACTTTTTTCTCTCTAGCTATAGTTCTGGCCATCATAACGAAGTCTTGCAAACTCTCTAGCAATAGGGAGAAGAAGCAGGCCAAGGAAAGAGAAGTTGTGCTGAAATCAAGTGCTGGGGAGAAACCTTACAAAATGTTTCAACTGAAAGATGTGAAGAAAGCAACAAATGGTTTTTCTCAAGACAGGATCTTAGGGAGTGGTGGCTTTGGGGAAGTCTACAGAGGTGAATTACAAGATGGAACATTGGTGGCTGTCAAGAAAGCTAAAGTGGGGAACCTGAAAAGCACTCAACAAGTGCTTAATGAGGTTGCAATACTTTCTCAAGTCAATCACAAGAACCTAGTAAGACTCTTGGGCTGTTGTGTTGAATCTGAGCAGCCTTTGATGATCTATGAATATATCTCAAATGGGACCCTCTATGACCATGTTCATGGTAGGTATTCCAACTTTCTAGACTGGAAAACAAGGCTTAAGGTTGCTTTTCAAACAGCTGAAGCATTGGCTTATTTGCATTCTGCTGCACACACCCCCATCTACCATAGAGATGTTAAGTCAACAAATATACTATTGGATGATGAATTCAATGCCAAAGTGTCAGATTTTGGGCTCTCTAGATTGGCTAACCCTGGACTTAGTCATGTGTCAACCTGTGCTCAAGGAACACTGGGGTACTTGGATCCTGAATACTATAGAAACTACCAGTTAACAGATAAAAGTGATGTTTATAGTTATGGGGTTGTGTTGCTAGAGCTTTTGACTTCCCAAAAAGCAATAGACTTCACTCGTGATCAAGATGATGTGAACCTAGCAATTCATGTGAGTCAATATGCTAACAATGGTGCAATCATGGAAGTGGTAGATCAAAGGCTTCTTTCTGTGGAACCCTCATGTGATAAAATGATCACAAGCATAAAACTCTTCTCAGAGCTTGCACTTAACTGTCTAAAGGAGAAGAAAGGTGAAAGGCCTAGTATGAGGGATATTGTTGAAAGCCTCATGTGCATAATTAGGATTGTAAATCAAGAGTGA 1893 0.4147 MIAESNMRPSFHFSLAFLLFLFLGHFTSSQKTCPNCGSMQVPYPLSTEPNCGDPTYRLRCDPHSQKLYFDTLNSSSYLVLRIMSSIQRLVVEPSPWLPGSCVTQDMPVSNGIWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCTSSSICHHYLESSGHVDTKRALECASDLHPCCTFVAGGVPSAYKIRLHNSGCKAFRSILHLDQQKPANQWEEGLEIQWTPPPEPVCRTQRDCSGDSKCSPAGKDGLFRCLCNRGHHWDPFIATCVKYKRKSKWKTSLEVSIGVITFFSLAIVLAIITKSCKLSSNREKKQAKEREVVLKSSAGEKPYKMFQLKDVKKATNGFSQDRILGSGGFGEVYRGELQDGTLVAVKKAKVGNLKSTQQVLNEVAILSQVNHKNLVRLLGCCVESEQPLMIYEYISNGTLYDHVHGRYSNFLDWKTRLKVAFQTAEALAYLHSAAHTPIYHRDVKSTNILLDDEFNAKVSDFGLSRLANPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFTRDQDDVNLAIHVSQYANNGAIMEVVDQRLLSVEPSCDKMITSIKLFSELALNCLKEKKGERPSMRDIVESLMCIIRIVNQE. 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05162 630 ProSiteProfiles Protein kinase domain profile. 346 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05162 630 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 318 421 - -
Seca1g05162 630 Gene3D Phosphorylase Kinase; domain 1 304 421 - -
Seca1g05162 630 SMART serkin_6 346 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05162 630 SUPERFAMILY Protein kinase-like (PK-like) 328 621 IPR011009 -
Seca1g05162 630 Gene3D Transferase(Phosphotransferase) domain 1 422 629 - -
Seca1g05162 630 Pfam Protein tyrosine and serine/threonine kinase 348 620 IPR001245 GO:0004672|GO:0006468
Seca1g05162 630 Pfam Wall-associated receptor kinase galacturonan-binding 33 89 IPR025287 GO:0030247
Seca1g05162 630 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Seca1g05162 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Seca1g05162 630 CDD STKc_IRAK 352 621 - -
Seca1g05162 630 FunFam Wall-associated receptor kinase-like 20 422 630 - -
Seca1g05162 630 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 15 623 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05162 Seca-Chr1 154564985 154566877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05162 33 630 Receptor kinase-like Gene Family AT5G02070 47.200 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca1g05162 PK_Tyr_Ser-Thr 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05162 - - gmx:100804678 1090.87