Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05152 ATGCTGGAAGGTAAACCGTCTAAGGACCCTGTGGTTCTATGGCTTAACGGTGGACCAGGGTGCTCTAGTTTCTATGGCTTCATATATGAGCATGGTCCATTTAAGTTTGAAAAACCAAAGACTAAAGGAACCCTGCCTACATTGCAGCTCAATCCATACAGTTGGTCAAAGTGGTTTGAACTATACCCTGAGTTCCTTTCCAACCCCTTACTCATTTCTGGAGAGTCATATGGTGGAATTTATGTACCTACTCTAGCTCAAAAAATAGTGGAAGGTATTGAAGGGGGTAAAAAACCCAGTTTGAATTTCAAGGGCTACATGATTGGAAATGCTCTTACTGATAACAATTTTGATTTCTATTCTACATTTCTATTTGCACATGGGATGGGTCTTCTCAATGATGATTTGTTTGAGGAGGCCACAAGACATTGCAAGGGAAAATCATATAATCCACCTCCCCGAGAGTGCTCAAAAGTCTTGTCAAAACTTTATAAGGTACTTGGTGGGTTGAACCCATATAACATTCTGGAACCATGTTATGATGGTGGAGTGGAGCATAAAAAACCCCATTCTTGGCCCCTTAGAGCTCCTTTGAAAAATGGAATAGTACCAACTTGGCCACAATTGAACACAATTATTCCATGCACTGATGATGAGGTTGCAACCTCATGGTTGAACAATCCTGAGGTTAGGAGGGCAATTCACACAGTAAAGGAAAGTGTGGTAAGCAAATGGAGCTCGTGTGCATCCCAAATTGATTATTATCATGACACTGTGAGCATGATTGATTACCACAAAAACCTAACTTCCAAAGGATATCGAGCACTTGTATACAGTGGTGATCATGACATGGTGATCCCATTTACTGGAACTCAAGCATGGATAAGATCGATTGGATATAAGACTGTTGATGGATGGAGGCCTTGGCTCGTTAATGATCAAGTTGCTGGGTTTACACAAGGATATGACAAAAATCTTACTTTTCTTACCATAAAGGGAGCTGGGCATGCTGTTCCAGAATATAAACCACAAGAGTCATTGAATTTTTTCAAACGTTTCGTGGCTGGATTGCCAGTATGA 1080 0.4083 MLEGKPSKDPVVLWLNGGPGCSSFYGFIYEHGPFKFEKPKTKGTLPTLQLNPYSWSKWFELYPEFLSNPLLISGESYGGIYVPTLAQKIVEGIEGGKKPSLNFKGYMIGNALTDNNFDFYSTFLFAHGMGLLNDDLFEEATRHCKGKSYNPPPRECSKVLSKLYKVLGGLNPYNILEPCYDGGVEHKKPHSWPLRAPLKNGIVPTWPQLNTIIPCTDDEVATSWLNNPEVRRAIHTVKESVVSKWSSCASQIDYYHDTVSMIDYHKNLTSKGYRALVYSGDHDMVIPFTGTQAWIRSIGYKTVDGWRPWLVNDQVAGFTQGYDKNLTFLTIKGAGHAVPEYKPQESLNFFKRFVAGLPV. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05152 359 SUPERFAMILY alpha/beta-Hydrolases 4 358 IPR029058 -
Seca1g05152 359 ProSitePatterns Serine carboxypeptidases, histidine active site. 326 343 IPR033124 GO:0004185
Seca1g05152 359 PRINTS Carboxypeptidase C serine protease (S10) family signature 58 83 IPR001563 GO:0004185|GO:0006508
Seca1g05152 359 PRINTS Carboxypeptidase C serine protease (S10) family signature 326 339 IPR001563 GO:0004185|GO:0006508
Seca1g05152 359 FunFam Carboxypeptidase 261 356 - -
Seca1g05152 359 Gene3D alpha/beta hydrolase 2 56 IPR029058 -
Seca1g05152 359 Gene3D alpha/beta hydrolase 57 357 IPR029058 -
Seca1g05152 359 ProSitePatterns Serine carboxypeptidases, serine active site. 72 79 IPR018202 GO:0004185
Seca1g05152 359 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 7 56 IPR001563 GO:0004185|GO:0006508
Seca1g05152 359 Pfam Serine carboxypeptidase 57 355 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05152 Seca-Chr1 154424505 154436734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05152 220 359 Calmodulin-binding Proteins AT2G22960 47.143 2.29e-44 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05152 K16296 - gmx:100792057 490.73