Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05149 ATGTTCTCGGAGTTCAAGAGCCTCGCATCCGTTCGCATTTGCAGGGATTCCTCCACTGGCAGGTCACTCTGTTATGGCTATGTCAACTTCCTTTCTCCCCAAGACGGTACATGCACATCTATTTCCCTTTCTTGTTCTTTAGCAACTCGTGCAATCGAGTTGAAGAATCATTCGATGCTGAATGGAAAAGTGGTAAGGGTCATGTGGTCACGTCGTGATCCAGATGTAAGGAAAAGCAGCATTGGGAACTTGTTTGTTAAGAACTTAGCCGAATCAATAGATAATGCTGGACTACAAGATATATTTAAAAAATATGGGAATATTTTGTCCAGCAAAGTTGTCATGTCTGAGGATGGGAAGAGCAAAGGATACGGCTTTGTTCAGTTTGAATCAGAGGAGTCTGCAAATACTGCTATCGAGAAGCTGAATGGCTCTACTATCAATGATAAGCAGATATATGTTGGGAAATTTGTCAAAAAAAGTGACCGCATTTTGCCTGGCCCTGATGCCAGATATACAAATTTGTACATGAAGAATTTGGACCCAGATATTACAGAAGCAACCCTGCAGGAAAAGTTTTCCTCTTTCGGCAAAATTGTTAGTTTGGCCATTGCAAAGGACGACAATGGGATGTCAAAGGGTTTTGGCTTCGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGCAATGAGTGGATCACAACTTGGTTCAAAGACTCTGTATGTAGCCAGGGCACAAAAGAAGGCTGAGCGCGAGCAGATCTTGCTCCATCAATTTGAGGAGAAACGAAAGGAACAAATCTTGAAATATAAGGGATCAAACATTTATGTGAAGAACATTGATGATAATGTTAGTGATGAAGAACTGAGAAATCATTTTAGTGCATGCGGCACTATAACTTCTGCAAAAGTTATGCGAGATGGCAAAGGGATAAGCAAAGGATTTGGTTTTGTCTGCTTCACCACTCCTGAGGAGGCCAATAAAGCTGTGAACACTTTTCATGGATTCATGTTTCATGGGAAACCACTATACGTTGCTCTTGCTCAGAGGAAGGAGGACAGGCAAGCACAGTTACAGCTTCAATACGCACAGCAAATAGCAGGACTACCTGGACCTTCAACTGCCATTATCCCTGGTGGATATCCTCCATACTACTATGCAACTTCTGGTGTTGTTTCACATCTGCCACCCCGAGCTGGGCTTATGTATCAACCTCTAGCAGTGAGGCCAGGATGGAGGGCTAATGGCTTTGCACCTCCGGCTAGATCATTTCAACAATCACCTGTGCCTGCTGTTTCTAACAGTACTAAGCAGCATAGACAAAACAGGGGCAGGATGAATGGGCATGCAATATCACAGGGAAGTACTCACTCTGGTACTTATATGCCACAGGTCCAGCAGGCTTCTCAGTCTGTCGTCTCTTCAAGAGAGTCAAATAATCAGCAGAGAACCGGACAGGCTAAGTATGTACCTAGTGGACGCCAACGTGAGATGGAAAAAGGATCTGGATTCTCATCTGGTGGTCCAAACTCTGGTGGAGGGTCCCAGGGATCAGAAGTGCTGCATAACATGCTTGCTGCTGCTCCTCCTGAGCAGCAGAAAGAGATACTTGGCGAGCATCTATTCATGCTTGTCCACAAATTCAAGCAGCCTAACCTAGCAGCAAAGATTACTGGGATGCTTTTGGAGATGGACAATGCAGAATTGCTTGTTCTCCTGGAATCACCAGAGTCTCTTTCAGCCAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACTCTAAGACCAAAGTTTCTGGCCAGGAGGTTATGCATTCAAATTACCTTTCAGCTGAGGTTGCAGTGAACTGA 1857 0.4432 MFSEFKSLASVRICRDSSTGRSLCYGYVNFLSPQDGTCTSISLSCSLATRAIELKNHSMLNGKVVRVMWSRRDPDVRKSSIGNLFVKNLAESIDNAGLQDIFKKYGNILSSKVVMSEDGKSKGYGFVQFESEESANTAIEKLNGSTINDKQIYVGKFVKKSDRILPGPDARYTNLYMKNLDPDITEATLQEKFSSFGKIVSLAIAKDDNGMSKGFGFVNYDNPDDAKKAMEAMSGSQLGSKTLYVARAQKKAEREQILLHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRNHFSACGTITSAKVMRDGKGISKGFGFVCFTTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQQIAGLPGPSTAIIPGGYPPYYYATSGVVSHLPPRAGLMYQPLAVRPGWRANGFAPPARSFQQSPVPAVSNSTKQHRQNRGRMNGHAISQGSTHSGTYMPQVQQASQSVVSSRESNNQQRTGQAKYVPSGRQREMEKGSGFSSGGPNSGGGSQGSEVLHNMLAAAPPEQQKEILGEHLFMLVHKFKQPNLAAKITGMLLEMDNAELLVLLESPESLSAKVEEAVQVLKNSKTKVSGQEVMHSNYLSAEVAVN. 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05149 618 FunFam Polyadenylate-binding protein 83 163 - -
Seca1g05149 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 353 IPR000504 GO:0003723
Seca1g05149 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 72 IPR000504 GO:0003723
Seca1g05149 618 MobiDBLite consensus disorder prediction 507 521 - -
Seca1g05149 618 FunFam Polyadenylate-binding protein 164 258 - -
Seca1g05149 618 SUPERFAMILY RNA-binding domain, RBD 273 366 IPR035979 GO:0003676
Seca1g05149 618 SMART rrm1_1 174 246 IPR000504 GO:0003723
Seca1g05149 618 SMART rrm1_1 277 349 IPR000504 GO:0003723
Seca1g05149 618 SMART rrm1_1 83 155 IPR000504 GO:0003723
Seca1g05149 618 MobiDBLite consensus disorder prediction 421 521 - -
Seca1g05149 618 FunFam Polyadenylate-binding protein 518 605 - -
Seca1g05149 618 Gene3D - 1 81 IPR012677 -
Seca1g05149 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 250 IPR000504 GO:0003723
Seca1g05149 618 PANTHER OS02G0815200 PROTEIN 1 154 - -
Seca1g05149 618 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 1 594 IPR006515 GO:0003723
Seca1g05149 618 Coils Coil 245 265 - -
Seca1g05149 618 SMART poly_2 532 596 IPR002004 GO:0003723
Seca1g05149 618 SMART rrm2_1 174 246 IPR003954 GO:0003676
Seca1g05149 618 SMART rrm2_1 83 155 IPR003954 GO:0003676
Seca1g05149 618 SMART rrm2_1 277 349 IPR003954 GO:0003676
Seca1g05149 618 Pfam Poly-adenylate binding protein, unique domain 527 593 IPR002004 GO:0003723
Seca1g05149 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 346 IPR000504 GO:0003723
Seca1g05149 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 243 IPR000504 GO:0003723
Seca1g05149 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 152 IPR000504 GO:0003723
Seca1g05149 618 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 520 598 IPR002004 GO:0003723
Seca1g05149 618 Gene3D - 259 364 IPR012677 -
Seca1g05149 618 Gene3D - 82 162 IPR012677 -
Seca1g05149 618 FunFam Polyadenylate-binding protein 259 367 - -
Seca1g05149 618 SUPERFAMILY PABC (PABP) domain 485 604 IPR036053 GO:0003723
Seca1g05149 618 CDD RRM2_I_PABPs 81 156 IPR045305 -
Seca1g05149 618 Gene3D - 518 613 - -
Seca1g05149 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 159 IPR000504 GO:0003723
Seca1g05149 618 MobiDBLite consensus disorder prediction 423 492 - -
Seca1g05149 618 SUPERFAMILY RNA-binding domain, RBD 1 79 IPR035979 GO:0003676
Seca1g05149 618 Gene3D - 163 258 IPR012677 -
Seca1g05149 618 CDD RRM4_I_PABPs 275 353 - -
Seca1g05149 618 SUPERFAMILY RNA-binding domain, RBD 83 254 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05149 Seca-Chr1 154406105 154410635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05149 2 616 Eukaryotic Initiation Factors Gene Family AT2G36660 51.608 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05149 K13126 - gmx:100779547 1004.97