Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05141 ATGGACACAGTGCTGGTGCCTCCTTGGCTTGAACCATTGCTACGCACACCATTCTTCAACGTGTGTCGGATTCACGCAGATGCTGCTAGGAGTGAATGTAACATGTATTGCTTAGATTGCCATGGCGATGCCTTTTGCTTTTATTGCCGTTCTTCAAGACACAAAGATCATCAAGTCATTCAGATAAGACGATCTTCTTATCACGATGTAGTGAGGGTCGCAGAAATTCAGAAGGTGTTGGACATTAGTGGAGTACAAACGTATGTGATAAACAGTGCTCGAGTTCTGTTCCTGAATGTGAGGCCTCAGCCAAAAACTGGGAAAGGGGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGATGTAAGCTTGAAGGAATAAAGAAAAATGGAAATGCAAGCCTTATTTTGGATGGTAAGAATAATGAAGCATTGACAAGGGAGGGGATGTCAAGGTCTAGACAAGAAGAAGGAGAATTGCGTGAAGGCTCAACACAAGACATGTATTCGGCCACGCCTCCTCCACCCCCTTCAAATGCAAGGAGAAGAAAAGGGATTCCTCATAGGGCACCTTTTGGATCTTAA 615 0.4455 MDTVLVPPWLEPLLRTPFFNVCRIHADAARSECNMYCLDCHGDAFCFYCRSSRHKDHQVIQIRRSSYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNVRPQPKTGKGVAHICEICGRSLLDPFRFCSLGCKLEGIKKNGNASLILDGKNNEALTREGMSRSRQEEGELREGSTQDMYSATPPPPPSNARRRKGIPHRAPFGS. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05141 204 Pfam PLATZ transcription factor 63 134 IPR006734 -
Seca1g05141 204 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 202 - -
Seca1g05141 204 MobiDBLite consensus disorder prediction 156 173 - -
Seca1g05141 204 SUPERFAMILY B-box zinc-binding domain 19 64 - -
Seca1g05141 204 MobiDBLite consensus disorder prediction 156 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05141 Seca-Chr1 154346498 154348897 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca1g05141 PLATZ 6.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05141 - - gmx:100803076 357.836