Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05140 ATGGACAACAATGATGACAAAATCATATTAGGCACACATGCGAGTCACCTTGTTATCTGTGCTGTTGCCACAATCTGTTTCGTTCTAGCAACAGTAGCATGCTATATCATTCTCTTCAGGTATTTCTATAGGTCTCCAAGAGTATTGCAACAGAGGAACAACAAGAGTGGTGGTGTGAAAGAGGAAATCCTCAACAAGATCCCAACTCTCCCATTCTCAACCCAAAAAATTGATGTCTTTCGTTTGGAACAAAATGAATGCTCCATTTGCCTTGGTGAATTGGAGGATGGAGAGCCAGTGAGGTTGTTACCTGCTTGTAAACATGCCTTCCACCCTTTTTGCATTGAATCATGGTTCATTGAACATGCAAATTGTCCTGTTTGTCGTTCACCGATTACTTGTGATTGTGAATTAAGGCTTCCAATAGATTTAGAAAATGATCATGGTGGTGGAGAACAGAGGATCTCGTCAAATGATGATCATCATCATCGGTTAATGAATGGTGATGTGAGATTTCAACGGCCACACCGTTTATTGCTTCACTCTGTCTCTTTCTCATCATCACGCATTCAGCAAAAGCCACGAGCTCTGGATATTTGGTTGAACAGGTCCTTATCTGTGAATCAGTCATCTTTATATATTGCCATTACCATACATGGAGATCATGAAATTGCTTCCACTTCTTCTATTGGTTGTGATGAATTGGATCAGGATCACATAGTGTGTGTTTAG 732 0.4044 MDNNDDKIILGTHASHLVICAVATICFVLATVACYIILFRYFYRSPRVLQQRNNKSGGVKEEILNKIPTLPFSTQKIDVFRLEQNECSICLGELEDGEPVRLLPACKHAFHPFCIESWFIEHANCPVCRSPITCDCELRLPIDLENDHGGGEQRISSNDDHHHRLMNGDVRFQRPHRLLLHSVSFSSSRIQQKPRALDIWLNRSLSVNQSSLYIAITIHGDHEIASTSSIGCDELDQDHIVCV. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05140 243 Pfam Ring finger domain 85 129 IPR001841 -
Seca1g05140 243 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Seca1g05140 243 SMART ring_2 87 128 IPR001841 -
Seca1g05140 243 SUPERFAMILY RING/U-box 79 135 - -
Seca1g05140 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 134 IPR013083 -
Seca1g05140 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 175 - -
Seca1g05140 243 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05140 Seca-Chr1 154338865 154339620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05140 15 132 C3H Transcription Factor Family AT3G10910 31.061 5.89e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05140 - - aprc:113863869 202.986