Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05131 ATGGATGCCGCCGTCAAGCCGGAATCCGAATCCGCAACGAGGAAAGTTTGCGTCGTGAATGGTTACATTGTTTACACTCGAGCGAAGAGGTCCTTAAATTCGTGTAACGGTTTCTCCGAGGATGGAGAATTCAAGAGATTCAAGTCAAATGCGGAGGTTCCGGTTAAAACGGAGAACGGAGTGGATTGCTGCATGGGAAAGGATAGCGTGTGTGATGAGGTGAAGAGCGAGAATAAAGAGGTTGATGTGAGGACATTCAAGCGGAATACGCGATCGACGTTGAAAGCAAATGTTGTTGAGTCTGGTGGTGAGAAGACAGGGAGTGAGCTAGAACAAGGTGGTGCTCCTGTTGCGAATGGTAAAACTGATGGTGGAACTCGAAGAAGCAAGTTGGAGTTGAAGATGTCGAAGAAGATTGTGGTTAACAGGAAGCCCATGACTGTGAAGGAGCTCTTCGATACAGGTTTACTTGATGGAGTCTCTGTGGTTTACATGGGCGGCATTAAGAAGGCTTCGGGATTACGGGGTGTTATTAAGGATGGAGGAATATTGTGCTCGTGCTGTCTGTGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGAGCAGCGCAGTATATTTGCCTCGAAAATGGGAAGAGCCTGCTTGATTTATTGAGAGCATGCAGGGGAGCTCCCCTGCATAATTTGGATGCGACAGTTCAAAATTTTGTTTGTTCCCCAGCCGAAGAAAAATATTTTACATGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCCTGTGTGGAAAGAGTGGGGCCTATATGCTGTTCTTGTGTGGAATCAAGGAAATCTGAAGAAAGTTCGAATAATGTAGTTGGCAAAAGAGTCAGGTCTCCTAGACCAGTGCCATTCTCCAGTCCATCCAGTACTTCCAAGCAATCTGTCTCCTCAAAAATAAATAGACCTTGGAAGAAAAGAACGAAGTCATCAAAAAGGGTTAGCAGCTCAAATTCTTCAAAGAGTGCTTCTGTGCCTATTCTACCCCGGAATAAAATTTTGTGGAAGACGAAAAAGAAGTTTGTATCTGCCCTTATTTTTGCACCCTTGATGTCAGTGTCGGTAAAGTTGAAGACCCCAAAAATCTCTTCAAATTCAAAAAGTTTATCCTCACAAAATAAGAGTCAGTGGAAGATAACTAAGAAGGACCAGCGGTTGCATAAGTTAGTTTTTGAGGAAGATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGTGGACAGAAGTTACTTGAAGGTTTTAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAACACTGTGGTCAGCCCCTCACAGTTTGAGGTCCATGCAGGTTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACGTCAAATGGGGTGTCTCTCCATGAGTTAGCAATATCGCTCTCAAAAGATCGAAAATACTCTGCAAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGAAACCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCAAGCATTCCCCGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGCACACAATGCCAATGCTATGGCAGCTGGAAGGATTGAAGGAGTTGATCCTATTGAACAGATAACCAATAGATGCATTCGCATAGTCAAAGACATTGAAGCGGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTCAGCAGATCTGGCTTTGGTCCACGCACAATAATAATCTGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCACAAGATGGCATATTTAAAGGAATTGCCGGAAGGGAATTGGCTCTGTTGCAATGATTGCACGAGAATACATTCTACTTTGGAGAACCTTTTGGTTAAGGGGGCTGAGAGACTTCCTGAGTCTCTCTTGAATGTTATAAAGAAAAAGCAAGAGGAAAAAGGATTAGATCCCATCAACGATGTTGATGTAACATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGCTTCAATCCTATAGTCGATGCAACTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGAAGGAATGTGCGGGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTACGTATTTTTGGCACGGATATCGCTGAGCTTCCTTTAGTTGCAACAAGTAACAGGAACCATGGGAAGGGCTACTTCCAAACACTCTTCTCCTGCATTGAGAGGCTCTTGGCTTTCTTGAATGTTAAGAACCTTGTGCTGCCAGCTGCAGAAGAAGCAGAATCCATATGGACAGATAAATTTGGGTTTAGCAAGGTGAAACCGGACCAGATTATAAAGCTTAGTGGTGCACAAGACTTTGTGTCTTTGCTAACAAGTATTGTGAGGGGGAGACACCATCACCCCAAGAGGCAAAAGGACAAATGTGACAATGCCAAATGGGCTTCCAAGCTAATTTCAGACTACAATGTGGCTCTTGTTCTCACAGTTGACTTAAAGGGCTGTGGTAACTTCAGTAGTGTGCAGAAAGCAGTTGATGCTGTTCCTGAATCTAGCTCTGATACCACTCTTATCATAATTGACTCTGGTATATACAGGGAGAAGGTAGTGGTTGAGGCCAACAAAACAAACTTGATACTTCAGGGTAAAGGGTATCTTGATACAATCATAGAATGGAATGACACTGCAAATTCCACTGGTGGGACTTCCTATAGCTACTCGTTTGGTGTATTTGCTTCTAAGTTCACTGCTTATAATATCAGCTTTAAGAACACTGCCCCTCCACCATCACCAGGAGAAGTTGGGGCACAGGCAGTGGCATTGAGAGTCACAGGTGATCAAGTTGCATTCTATGGATGTGGATTTTATGGAGCACAGGACACACTCAATGATGACAGTGGGAGACATTACTTTAAAGAATGTTTCATACAGGGATCCATTGATTTCATATTTGGAAATGGTAGATCACTTTATGAGGATTGTACCATAAACTCAATAGCAAAAGAAGATAGAAATGATTTTGGGGTCAGCGGGTCGATCACAGCACAAGGGAGGCAATCAATGAAGGAGGAAACAGGGTTTTCATTTGTGAATTGTAGCATTGTTGGGAGTGGGAAAGTGTGGCTTGGAAGAGCATGGGGAGCCTCTGCCACTGTGGTCTTCTCAAAAACTTACATGTCTGATGTTGTAGCTGCTGAAGGATGGAACGATTGGAGAGACCCCTCTAGAGACCAGAGCGTGTTTTTTGGGGAGTATCATTGCTTGGGAGCAGGAGCAAATTATTCATCTAGAGTCTCTTATGCGAAACAACTCAGGGATTACGAAGCAATCTCCTACATGAATATTTCGTACATAAATGGAGATGATTGGCTTCTTAATTATTTTCAAGACCATGTTGACCATTCATATACACAGTGGAAACAATAA 3594 0.4324 MDAAVKPESESATRKVCVVNGYIVYTRAKRSLNSCNGFSEDGEFKRFKSNAEVPVKTENGVDCCMGKDSVCDEVKSENKEVDVRTFKRNTRSTLKANVVESGGEKTGSELEQGGAPVANGKTDGGTRRSKLELKMSKKIVVNRKPMTVKELFDTGLLDGVSVVYMGGIKKASGLRGVIKDGGILCSCCLCNGRRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDLLRACRGAPLHNLDATVQNFVCSPAEEKYFTCKRCKGCFPSSCVERVGPICCSCVESRKSEESSNNVVGKRVRSPRPVPFSSPSSTSKQSVSSKINRPWKKRTKSSKRVSSSNSSKSASVPILPRNKILWKTKKKFVSALIFAPLMSVSVKLKTPKISSNSKSLSSQNKSQWKITKKDQRLHKLVFEEDGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTVVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAHNANAMAAGRIEGVDPIEQITNRCIRIVKDIEAELSGCALCRGVDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNDCTRIHSTLENLLVKGAERLPESLLNVIKKKQEEKGLDPINDVDVTWRLLNGKIASPETRPLLLEAVSIFHECFNPIVDATSGRDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNRNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKVKPDQIIKLSGAQDFVSLLTSIVRGRHHHPKRQKDKCDNAKWASKLISDYNVALVLTVDLKGCGNFSSVQKAVDAVPESSSDTTLIIIDSGIYREKVVVEANKTNLILQGKGYLDTIIEWNDTANSTGGTSYSYSFGVFASKFTAYNISFKNTAPPPSPGEVGAQAVALRVTGDQVAFYGCGFYGAQDTLNDDSGRHYFKECFIQGSIDFIFGNGRSLYEDCTINSIAKEDRNDFGVSGSITAQGRQSMKEETGFSFVNCSIVGSGKVWLGRAWGASATVVFSKTYMSDVVAAEGWNDWRDPSRDQSVFFGEYHCLGAGANYSSRVSYAKQLRDYEAISYMNISYINGDDWLLNYFQDHVDHSYTQWKQ. 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05131 1197 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 488 565 - -
Seca1g05131 1197 Pfam PHD-finger 502 543 IPR019787 -
Seca1g05131 1197 SUPERFAMILY FYVE/PHD zinc finger 581 643 IPR011011 -
Seca1g05131 1197 ProSiteProfiles Zinc finger PHD-type profile. 499 544 IPR019787 -
Seca1g05131 1197 Pfam Tify domain binding domain 176 231 IPR032308 -
Seca1g05131 1197 Pfam Tify domain binding domain 439 485 IPR032308 -
Seca1g05131 1197 MobiDBLite consensus disorder prediction 291 345 - -
Seca1g05131 1197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 576 IPR013083 -
Seca1g05131 1197 ProSitePatterns Zinc finger PHD-type signature. 502 541 IPR019786 -
Seca1g05131 1197 Pfam Pectinesterase 885 1177 IPR000070 GO:0030599|GO:0042545
Seca1g05131 1197 SMART PHD_3 589 646 IPR001965 -
Seca1g05131 1197 SMART PHD_3 501 542 IPR001965 -
Seca1g05131 1197 MobiDBLite consensus disorder prediction 304 320 - -
Seca1g05131 1197 MobiDBLite consensus disorder prediction 99 126 - -
Seca1g05131 1197 FunFam Pectinesterase 878 1185 - -
Seca1g05131 1197 CDD PHD1_AIRE 501 541 - -
Seca1g05131 1197 Gene3D - 878 1186 IPR012334 -
Seca1g05131 1197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 586 648 IPR013083 -
Seca1g05131 1197 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 586 648 - -
Seca1g05131 1197 PANTHER AUTOIMMUNE REGULATOR 42 838 - -
Seca1g05131 1197 SUPERFAMILY Pectin lyase-like 880 1181 IPR011050 -
Seca1g05131 1197 ProSitePatterns Pectinesterase signature 2. 1032 1041 IPR033131 -
Seca1g05131 1197 SUPERFAMILY FYVE/PHD zinc finger 488 546 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05131 Seca-Chr1 154208990 154220600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05131 137 836 PHD Transcription Factor Family AT2G36720 54.126 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca1g05131 Pectinesterase 1.1e-64 CL0268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05131 - - gmx:100802562 1318.52