Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05123 ATGAACACAACCCTCACTCTAACATCCGTGAGCGGGAGAGGTTTCCTTCCTATCGCCAACATCAGCCGCATCATGAAAAAGGCCCTCCCTGCCAATGGAAAAATCGGTAAGGATGCCAAAGAGACCGTTCAAGAGTGTGCGTCTCCAATTTCATCATGCTCATCACTAATGAATTTGCAGGGAAGCTCCACTGCGGAGAAAGGTGGCAAAGACGAAAGTAAGGTTAGAGCATTTCTATATTTATTTAATTCTTTTTAA 258 0.4419 MNTTLTLTSVSGRGFLPIANISRIMKKALPANGKIGKDAKETVQECASPISSCSSLMNLQGSSTAEKGGKDESKVRAFLYLFNSF. 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05123 85 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 48 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca1g05123 85 Gene3D Histone, subunit A 13 73 IPR009072 GO:0046982
Seca1g05123 85 SUPERFAMILY Histone-fold 15 48 IPR009072 GO:0046982
Seca1g05123 85 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 15 48 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05123 Seca-Chr1 154064420 154065778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05123 15 48 CCAAT-HAP3 Transcription Factor Family AT2G38880 88.235 3.18e-16 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05123 K08065 - egt:105952889 66.6254