Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05110 ATGCAAATCATCAAGGGGAAACGCACAAAACGTCAAAGGCTACCATCCCCACTTAGATTAGCCATGTCAACATCTTCAAGAAGCAGCACTACTGAAAATTCAGGAGGATTTGACCATGCTACAACCTCAAATGTTGATGAATTCAAGAACAGAACAGAAGAGGAAGAGGATATGGCTAATTGTTTGATTCTCTTGGCACAAGGCCATCATACCCAGAAAAAAGTATCAAATTCATCACACCATGTAGCTGCACATTACAACAACAATAGCAAAAAGGCAGGGCTTTTGCTTTACCAGTGCAAGACTTGTAACAGATGTTTCCCTTCATTCCAAGCACTTGGTGGGCACAGAGCAAGTCACAAGAAACCTAAGGCAAATACAGAGGAAAAACAAGGAGTTAATACTAGTTTTGTGAATGATTATGGTGATGGTGACACCACAAACACAAACCTTACTTTACAATTATCAAGTAACAGGGCTTTGTGTAGAAACAACACTATGACTACTACAACTACTCCTAATACTAAATCAAAAGTTCATGAGTGTTCTATCTGTGGGGCTGAATTCACATCTGGGCAAGCCTTAGGGGGACATATGAGGAGGCATAGAACTGTTTTGAATATGTCTGCAGCTACAACAATATCTATGAATAGTGATCATGGGAGCCCTGAAATCCATGAAGCCAAGAAACCCAGAAATGTTTTGAAGTTGGACTTGAATCTTCCTGCTGCACCTGAGGATGATAACAGAGAATCAAAGTTTCCGTTTCAGTCCAAAGAAAAAGTTATTGTCTTCTCTGCAACGTCTTTGGTGGATTGTCATTACTAA 828 0.3998 MQIIKGKRTKRQRLPSPLRLAMSTSSRSSTTENSGGFDHATTSNVDEFKNRTEEEEDMANCLILLAQGHHTQKKVSNSSHHVAAHYNNNSKKAGLLLYQCKTCNRCFPSFQALGGHRASHKKPKANTEEKQGVNTSFVNDYGDGDTTNTNLTLQLSSNRALCRNNTMTTTTTPNTKSKVHECSICGAEFTSGQALGGHMRRHRTVLNMSAATTISMNSDHGSPEIHEAKKPRNVLKLDLNLPAAPEDDNRESKFPFQSKEKVIVFSATSLVDCHY. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05110 275 PANTHER ZINC FINGER PROTEIN ZAT5 39 259 - -
Seca1g05110 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Seca1g05110 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 202 IPR013087 -
Seca1g05110 275 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Seca1g05110 275 SUPERFAMILY beta-beta-alpha zinc fingers 98 202 IPR036236 -
Seca1g05110 275 Gene3D Classic Zinc Finger 96 202 - -
Seca1g05110 275 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Seca1g05110 275 MobiDBLite consensus disorder prediction 18 43 - -
Seca1g05110 275 MobiDBLite consensus disorder prediction 1 44 - -
Seca1g05110 275 Pfam C2H2-type zinc finger 179 204 - -
Seca1g05110 275 Pfam C2H2-type zinc finger 98 123 - -
Seca1g05110 275 SMART c2h2final6 180 202 IPR013087 -
Seca1g05110 275 SMART c2h2final6 98 120 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05110 Seca-Chr1 153921476 153922804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05110 3 275 C2H2 Transcription Factor Family AT5G03510 43.103 4.61e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g05110 zf-C2H2_6 1.3e-12 CL0361