Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05106 ATGTGTATTCACTGTGGTGTTTGTATGGGGAGATATTTCTGCTCCAAATGCAAGTTCTTCGATGATGATGTAACAAAAAATCAATACCATTGTGATGAATGTGGCATCTGCAGAACTGGAGGTGAAGAGAACTTTTTCCACTGTAACAAATGTGGATGCTGTTATTCATCATTGTTGAAGGATTCACACCACTGTATTGAAAAGGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTTTCTTTTTGATACAACAAAAGACATTACTGTGTTGCCATGTGGTCACACCATACATTTGGGATGTGTGAGAGAAATGGAACAACATTTCCAGTATTCATGCCCTGTTTGCTCAAAGTCTTTCTGTGACATGTCACGCGTGTGGGAGAAACTAGATGAGGAGGTTGCATCAACACCTATGCCTGAAATGTATCAAAATAAGATGGTTTGGATTCTTTGCAATGATTGCGGGGAAACATCTGAAGTAAGTTTTCATTTTGTGGCTCACAAGTGCCTTAAATGCAAGTCCTACAACACAAGAAAGACACAAGCTGCGCCTCCTTCTTGCTCATCGAGAATTGAAGAGATTGTTAGATGA 594 0.399 MCIHCGVCMGRYFCSKCKFFDDDVTKNQYHCDECGICRTGGEENFFHCNKCGCCYSSLLKDSHHCIEKAMHHNCPVCFEFLFDTTKDITVLPCGHTIHLGCVREMEQHFQYSCPVCSKSFCDMSRVWEKLDEEVASTPMPEMYQNKMVWILCNDCGETSEVSFHFVAHKCLKCKSYNTRKTQAAPPSCSSRIEEIVR. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05106 197 Pfam RING-type zinc-finger 74 114 IPR027370 -
Seca1g05106 197 Pfam Zinc-ribbon 121 179 IPR039512 -
Seca1g05106 197 SUPERFAMILY RING/U-box 72 123 - -
Seca1g05106 197 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 2 183 - -
Seca1g05106 197 ProSiteProfiles Zinc finger CTCHY-type profile. 9 73 IPR017921 -
Seca1g05106 197 SMART ring_2 74 116 IPR001841 -
Seca1g05106 197 Gene3D - 145 185 - -
Seca1g05106 197 ProSiteProfiles Zinc finger RING-type profile. 74 117 IPR001841 -
Seca1g05106 197 SUPERFAMILY Zinc hairpin stack 10 67 IPR037275 -
Seca1g05106 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 137 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05106 Seca-Chr1 153870184 153873405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05106 6 190 C2H2 Transcription Factor Family AT3G18290 42.632 2.82e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05106 K10144 - mnt:21405387 395.586