Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05104 ATGCTCCAAACAACCTGCATTTTGCTAATCTTTCTTCTGAGTTCGTTTTTACCACTTGGAACAGCAATGCTGAACCTAACTCTTCCCGGTGCACACCCTGACCCTGATGCTGTTGCCCATGAAGTTCATAGGAAGGTTAATGCTTCAATTGCAAGAAGGGAAATGCTAGCAATGTCACAGAAAGATGAGTCTTCTTCATGTTTCACAGGGAACCCAATTGATGATTGTTGGAAATGTGACCCAGATTGGCCTAACAACCGTCAGAGGTTAGCTGATTGTGCCATTGGGTTTGGTCAGTATGCAAAGGGAGGAAAAGGTGGTGAATTTTATGTTGTTACTGATTCTTCAGATAATGATGCTGTGAATCCCAAACCTGGAACTTTGAGATATGCAGTGATACAGAATGAACCACTGTGGATAGTGTTTCCTAGTAACATGATGATAAAGCTGTCTCAGGAGCTGATCTTTAACAGCTACAAGACCATTGATGGGCGTGGAGCAGATGTTCACATTGTGGGAGGAGGGTGCATCACTCTGCAGTATATAAGCAATGTCATTATACACAATATTCATATCCACCATTGTCATCCCTCAGGTAACACAAACGTGCGGTCAAGTCCAGAGCACTACGGGTACAGAACAGAATCAGACGGTGATGGGATATCCATATTCGGATCCAAAGACATATGGATCGACCACTGCACCCTATCACGTTGCAAGGACGGTTTAATAGACGCTGTGATGGGTTCAACCGCCATAACCATATCCAACAACTTCATGTCACACCACAACGAAGTGATGCTATTGGGACACAGCGACGATTACCTTCCAGACTCAGGCATGCAGGTAACCATCGCTTTCAACCACTTCGGTGAGAAGCTCGTCCAGAGGATGCCACGTTGCAGAAGAGGTTACATTCACGTTGTCAACAACGACTTCACTCAGTGGGAGATGTATGCTATTGGAGGGAGTGGGGAACCCACTATTAATAGCCAGGGGAATCGTTACACTGCACCTACTAACCCTTTCGCTAAGGAAGTGACGAAGAGGGTGGAGACTGAACAGTCCAAGTGGAAGGGATGGAATTGGAGGTCAGAGGGTGACATTATGGTGAATGGTGCATTTTTTGTAACGTCAGGGGAAGGTCTTGAGGTTAAGTATGAGAAGGCTTATAGCATTGAACCTAAGTCTGCTGATCGCATTTCTCTCCTCACCATGTCTGCTGGAGTTCTAGGCAACGCCAGGGACAACAACCTGGGAATGTGGAGCAGAGGAGGACCTAACGGTGATGGTGATGGTGATGACACATACGAGTCTGGCCCGGAGTACACGGATGATATGTCGAGGAGTGCGAGAGTGGTGCTGCCACCTTCACCTGCTTTAACTCTTGTGTTGCTGTGCTTCTTGTCTTGTAGAATAATACCGTTAACGTTCATTCTATGA 1443 0.4622 MLQTTCILLIFLLSSFLPLGTAMLNLTLPGAHPDPDAVAHEVHRKVNASIARREMLAMSQKDESSSCFTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTAITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGEPTINSQGNRYTAPTNPFAKEVTKRVETEQSKWKGWNWRSEGDIMVNGAFFVTSGEGLEVKYEKAYSIEPKSADRISLLTMSAGVLGNARDNNLGMWSRGGPNGDGDGDDTYESGPEYTDDMSRSARVVLPPSPALTLVLLCFLSCRIIPLTFIL. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05104 480 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Seca1g05104 480 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Seca1g05104 480 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Seca1g05104 480 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Seca1g05104 480 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Seca1g05104 480 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Seca1g05104 480 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Seca1g05104 480 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Seca1g05104 480 SMART amb_all 145 342 IPR002022 -
Seca1g05104 480 MobiDBLite consensus disorder prediction 420 443 - -
Seca1g05104 480 PANTHER PECTATE LYASE 18-RELATED 31 413 IPR045032 GO:0030570
Seca1g05104 480 Gene3D - 70 412 IPR012334 -
Seca1g05104 480 FunFam Pectate lyase 70 412 - -
Seca1g05104 480 SUPERFAMILY Pectin lyase-like 66 397 IPR011050 -
Seca1g05104 480 Pfam Pectate lyase 154 330 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05104 Seca-Chr1 153848367 153852885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05104 1 473 Polysaccharide Lyase AT3G53190 74.370 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05104 K01728 - gmx:100775595 832.787